Paper figures and scripts -- slight changes to pathoscore output for paper and enduser - #68

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jimhavrilla wants to merge 9 commits into

quinlan-lab:masterfrom

jimhavrilla:ppaper

Commits on Mar 26, 2019

creating score, truth, gene, population sets

Jim Havrilla
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5a9f579
annotating truth sets with score sets

Jim Havrilla
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159474e
new gene sets added

Jim Havrilla
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d4fb544
added some gene set annotation, fixing scripts, added evaluate

Jim Havrilla
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bd9ccc9
correlation matrix work
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ccbc7a4

Commits on Apr 1, 2019

added evaluations, annotations for figures, figure script, top 10 genes, and F1 score to csv in pathoscore
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63fe3f4

Commits on May 1, 2019

added clinical utility table printing to TSV for paper calculations
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388449f

Commits on Jun 21, 2019

added grouped barplots for cu and auc/f1/j, amended evaluate.sh
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785edcd

Commits on Jun 29, 2019

removed gerp and mtr
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62c5ae5