Pando/DESCRIPTION at main · quadbio/Pando · GitHub

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Package: Pando
Version: 1.1.1
Type: Package
Title: Inferring regulomes from multi-modal single-cell genomics data
Authors@R: person(given = "Jonas Simon",
               family = "Fleck",
               role = c("aut", "cre"),
               email = "jonas.fleck@bsse.ethz.ch",
               comment = c(ORCID = "0000-0002-4686-7254"))
Maintainer: Jonas Simon Fleck <jonas.fleck@bsse.ethz.ch>
Description: Pando jointly uses scRNA-seq and scATAC-seq measurements to infer regulatory relationships between TF-binding site pairs and target genes.
License: MIT
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
biocViews:
Depends:
    R (>= 4.0.0)
Imports:
    tidyverse (>= 2.0.0),
    Seurat (>= 5.0.0),
    Signac (>= 1.12.0),
    Matrix (>= 1.5-0),
    MatrixGenerics (>= 1.10.0),
    ggplot2,
    IRanges (>= 2.32.0),
    GenomicRanges,
    motifmatchr,
    glmnetUtils,
    bayestestR,
    ggpointdensity,
    ggraph,
    tidygraph,
    pals,
    patchwork,
    TFBSTools,
    foreach,
    sparseMatrixStats (>= 1.10.0),
    irlba,
    uwot,
    grr
Suggests:
    rmarkdown,
    testthat,
    reticulate,
    xgboost,
    brms
Remotes:
    github::immunogenomics/presto