Replace storageFormat with Parquet and upgrade workflow-tengo

[kevindetry-milaboratories]

Greptile Summary

This PR migrates all pfconvParams storage format configurations from "Binary" to "Parquet" across six call sites in the workflow Tengo code, and upgrades @platforma-sdk/workflow-tengo from 6.6.5 to 6.7.1 (along with transitive updates to software-ptabler and software-ptexter).

• storageFormat migration: All six occurrences of storageFormat: "Binary" in export-settings.lib.tengo (functions shmTree, shmTreeNodes, shmTreeNodesWithClones, shmTreeNodesUniqueIsotype) and soi.tpl.tengo (resultConvParams, aggregatedConvParams) are updated to "Parquet". No "Binary" references remain in the codebase.
• Dependency upgrade: @platforma-sdk/workflow-tengo bumped to 6.7.1, which pulls in updated software-ptabler@2.1.5 and software-ptexter@1.2.3 as transitive dependencies.

Confidence Score: 5/5

The change is safe to merge — it consistently replaces all six Binary storage format references with Parquet and aligns the SDK version across the workspace catalog and lock file with no missing sites.

All storageFormat occurrences across the two affected files are updated; a grep of the full workflow/src directory confirms no Binary references remain. The lock file is internally consistent with the workspace catalog bump. The transitive dependency upgrades are minor patch increments pulled in automatically by the SDK version bump.

No files require special attention.

Important Files Changed

Filename	Overview
workflow/src/export-settings.lib.tengo	All four storageFormat: "Binary" occurrences replaced with "Parquet" in shmTree, shmTreeNodes, shmTreeNodesWithClones, and shmTreeNodesUniqueIsotype — migration appears complete and consistent.
workflow/src/soi.tpl.tengo	Both storageFormat: "Binary" occurrences (resultConvParams, aggregatedConvParams) replaced with "Parquet" — consistent with the export-settings changes.
pnpm-workspace.yaml	Catalog version for @platforma-sdk/workflow-tengo bumped from ^6.6.5 to ^6.7.1.
pnpm-lock.yaml	Lock file updated to resolve workflow-tengo@6.7.1, software-ptabler@2.1.5, and software-ptexter@1.2.3 — lock is internally consistent with the workspace catalog.

Flowchart

%%{init: {'theme': 'neutral'}}%%
flowchart TD
    A[Workflow Tengo 6.7.1] --> B[export-settings.lib.tengo]
    A --> C[soi.tpl.tengo]

    B --> D[shmTree\npfconvParams]
    B --> E[shmTreeNodes\npfconvParams]
    B --> F[shmTreeNodesWithClones\npfconvParams]
    B --> G[shmTreeNodesUniqueIsotype\npfconvParams]

    C --> H[resultConvParams]
    C --> I[aggregatedConvParams]

    D --> J["storageFormat: Parquet\n(was: Binary)"]
    E --> J
    F --> J
    G --> J
    H --> J
    I --> J

    J --> K[pframes conversion\nsoftware-ptabler@2.1.5\nsoftware-ptexter@1.2.3]

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%%{init: {'theme': 'base', 'themeVariables': {"darkMode": true, "background": "#0d1117", "primaryColor": "#21262d", "primaryTextColor": "#e6edf3", "primaryBorderColor": "#8b949e", "lineColor": "#8b949e", "textColor": "#e6edf3", "edgeLabelBackground": "#161b22", "actorBkg": "#21262d", "actorBorder": "#8b949e", "actorTextColor": "#e6edf3", "actorLineColor": "#8b949e", "signalColor": "#8b949e", "signalTextColor": "#e6edf3", "noteBkgColor": "#373320", "noteBorderColor": "#d4a72c", "noteTextColor": "#f0e6c0", "labelBoxBkgColor": "#21262d", "labelBoxBorderColor": "#8b949e", "labelTextColor": "#e6edf3", "loopTextColor": "#e6edf3", "activationBkgColor": "#30363d", "activationBorderColor": "#8b949e"}}}%%
flowchart TD
    A[Workflow Tengo 6.7.1] --> B[export-settings.lib.tengo]
    A --> C[soi.tpl.tengo]

    B --> D[shmTree\npfconvParams]
    B --> E[shmTreeNodes\npfconvParams]
    B --> F[shmTreeNodesWithClones\npfconvParams]
    B --> G[shmTreeNodesUniqueIsotype\npfconvParams]

    C --> H[resultConvParams]
    C --> I[aggregatedConvParams]

    D --> J["storageFormat: Parquet\n(was: Binary)"]
    E --> J
    F --> J
    G --> J
    H --> J
    I --> J

    J --> K[pframes conversion\nsoftware-ptabler@2.1.5\nsoftware-ptexter@1.2.3]

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Prompt To Fix All With AI

Fix the following 1 code review issue. Work through them one at a time, proposing concise fixes.

---

### Issue 1 of 1
workflow/src/export-settings.lib.tengo:250-258
**Key terms touched by this PR**

The following terms are central to the changes in this PR:

- **`storageFormat`** — A field within `pfconvParams` that controls how converted pframes data is persisted on disk. Previously set to `"Binary"` (a proprietary binary layout); now set to `"Parquet"` (a columnar open format) in all six call sites across `export-settings.lib.tengo` and `soi.tpl.tengo`.

- **`pfconvParams`** — The parameter object passed to the pframes conversion step. It groups `axes`, `columns`, `storageFormat`, and `partitionKeyLength` into a single configuration that describes how tabular output is serialized. Updated indirectly via the `storageFormat` change.

- **`workflow-tengo`** (`@platforma-sdk/workflow-tengo`) — The core Tengo workflow SDK that orchestrates all pipeline steps. Bumped from `6.6.5` → `6.7.1`; the new minor release is what makes `"Parquet"` the expected (and presumably required) format.

- **`software-ptabler`** (`@platforma-open/milaboratories.software-ptabler`) — A transitive dependency of `workflow-tengo` responsible for tabular data operations. Updated from `2.1.3` → `2.1.5` as part of the SDK bump.

- **`software-ptexter`** (`@platforma-open/milaboratories.software-ptexter`) — A transitive dependency of `workflow-tengo` handling text/sequence column encoding. Updated from `1.2.2` → `1.2.3` as part of the SDK bump.

- **`shmTree` / `shmTreeNodes` / `shmTreeNodesWithClones` / `shmTreeNodesUniqueIsotype`** — Export-settings factory functions building `pfconvParams` + `cmdArgs` for different SHM-tree table views. All four had `storageFormat` updated from `"Binary"` to `"Parquet"`.

- **`resultConvParams` / `aggregatedConvParams`** — Inline conversion-parameter objects in `soi.tpl.tengo` for the SOI search result table and its aggregated counterpart. Both had `storageFormat` updated from `"Binary"` to `"Parquet"`.

_{Reviews (1): Last reviewed commit: "Replace storageFormat with Parquet and u..." | Re-trigger Greptile}

[gemini-code-assist]

Code Review

This pull request updates the @platforma-sdk/workflow-tengo dependency to version 6.7.1 and changes the storageFormat configuration from "Binary" to "Parquet" in several Tengo workflow scripts, including export-settings.lib.tengo and soi.tpl.tengo. There are no review comments, and I have no additional feedback to provide.

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