Make table and graph outputs retentive

[kevindetry-milaboratories]

No description provided.

[gemini-code-assist]

Summary of Changes

Hello @kevindetry-milaboratories, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request focuses on enhancing the persistence of table and graph outputs within the clonotype-clustering model. By switching to retentiveOutputWithStatus, the application will now preserve the state of the clustersTable, clustersPf, and bubblePlotPf outputs, improving user experience by maintaining context across sessions.

Highlights

• Output Persistence: The primary change involves modifying the clustersTable, clustersPf, and bubblePlotPf outputs to be retentive. This means that the state of these outputs will be preserved across sessions or interactions.
• Code Modification: The outputWithStatus calls for clustersTable, clustersPf, and bubblePlotPf have been replaced with retentiveOutputWithStatus.
• Changeset: A changeset file (.changeset/gentle-taxes-knock.md) has been added to document this change.

Changelog

• .changeset/gentle-taxes-knock.md
  • Added changeset to document the change of making table and graph outputs retentive.
• model/src/index.ts
  • Replaced outputWithStatus with retentiveOutputWithStatus for clustersTable, clustersPf, and bubblePlotPf to make these outputs retentive.

Activity

• The pull request introduces a new changeset file.
• The pull request modifies the model/src/index.ts file to update the output methods.

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[gemini-code-assist]

Code Review

This pull request makes the clustersTable, clustersPf, and bubblePlotPf outputs retentive. This is a good improvement for the user experience. However, I've identified a pre-existing critical bug in the implementation of the bubblePlotPf output where it has a recursive definition. This will prevent it from functioning correctly. I've left a comment with details on the issue.