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CRISPResso2 Result inconsistency (Allele assignments 1b vs Allele plots)

Status: Open.

#656 In pinellolab/CRISPResso2;

· DemonofLaplace opened on Jun 30, 2026

When running CRISPRessoBatch, Figure 2b in .html output does not render when using long amplicon names via the parameter "amplicon_name"

Status: Open.

#652 In pinellolab/CRISPResso2;

· Will338 opened on Jun 11, 2026

Amplicon inference fails with paired-end reads

Status: Open.

#648 In pinellolab/CRISPResso2;

· itrujnara opened on May 28, 2026

CRISPRessoCompare and CRISPRessoPooledWGSCompare

Status: Open.

#645 In pinellolab/CRISPResso2;

· braghavendramicrocrispr-lgtm opened on May 5, 2026

Create distinct quantification windows for different mutation types

Status: Open.

#639 In pinellolab/CRISPResso2;

· timothy-barry opened on Apr 23, 2026

CRISPRessoCompare error

Status: Open.

#638 In pinellolab/CRISPResso2;

· wangxuedong930227 opened on Apr 22, 2026

Long read compatibility

Status: Open.

#636 In pinellolab/CRISPResso2;

· sq101 opened on Apr 17, 2026

CRISPRESSO2 Web App Submission Issues

Status: Open.

#632 In pinellolab/CRISPResso2;

· andrewrvh2 opened on Apr 1, 2026

Question about exporting per-read editing calls (read IDs) from CRISPResso2

Status: Open.

#604 In pinellolab/CRISPResso2;

· zwfsnowdream opened on Jan 26, 2026

About Quality filtering

Status: Open.

#596 In pinellolab/CRISPResso2;

· zwfsnowdream opened on Dec 16, 2025

CRISPRessoBatch in HDR mode not accepting multiple qwc values

Status: Open.

#576 In pinellolab/CRISPResso2;

· alexandyan opened on Nov 7, 2025

CRISPResso amplicon length cap?

Status: Open.

#565 In pinellolab/CRISPResso2;

· gmehigan opened on Oct 10, 2025