Issues

• New release needed

  parklab/bamsnap#37 · Filter by author elleira opened on Aug 31, 2026

• CRAM inputs throw an error when the reference genome in CRAM header is not accessible

  parklab/bamsnap#36 · Filter by author akriz opened on May 14, 2026

• Works with your test data but not with mine

  parklab/bamsnap#35 · Filter by author jdenavascues opened on Feb 2, 2024

• Sort and color by tag

  parklab/bamsnap#34 · Filter by author regevs opened on Jan 12, 2024

• ValueError: y1 must be greater than or equal to y0

  parklab/bamsnap#33 · Filter by author SeongGyuKwon opened on Dec 14, 2023
  2

• IndexError: string index out of range

  parklab/bamsnap#32 · Filter by author shin0727 opened on May 18, 2023
  2

• Specify custom annotation track?

  parklab/bamsnap#30 · Filter by author ayaanhossain opened on May 20, 2022

• Plotting in Jupyter via library API?

  parklab/bamsnap#29 · Filter by author ayaanhossain opened on May 10, 2022

• bamsnap runs into error when -process option is used

  parklab/bamsnap#27 · Filter by author ManavalanG opened on Aug 9, 2021

• PacBio CCS reads support

  parklab/bamsnap#26 · Filter by author sjin09 opened on Aug 5, 2021
  3

• Runs into error with genomic region size in megabases

  parklab/bamsnap#25 · Filter by author ManavalanG opened on Jun 16, 2021
  1

• Programatic use

  parklab/bamsnap#24 · Filter by author iiSeymour opened on Apr 15, 2021

• Would you please support mm10?

  parklab/bamsnap#23 · Filter by author shengqh opened on Apr 13, 2021
  4

• Bamsnap can't recognize lower case letters in reference genomes

  parklab/bamsnap#22 · Filter by author SeongGyuKwon opened on Mar 11, 2021

• HTML created for multi-sample snaps can't load the snaps

  parklab/bamsnap#21 · Filter by author B3rse opened on Mar 2, 2021
  2

• KeyError on RNA-seq data

  parklab/bamsnap#20 · Filter by author simoncchu opened on Feb 21, 2021
  2

• reference sequence with lowercase characters

  parklab/bamsnap#18 · Filter by author tkonopka opened on Feb 15, 2021

• Unclear error when using BAM from Nanopore data

  parklab/bamsnap#15 · Filter by author mcortes-lopez opened on Jan 26, 2021
  4

• Error about reference index

  parklab/bamsnap#14 · Filter by author sylee623 opened on Jan 26, 2021
  2

• Cant manage to get working with alternative FASTA

  parklab/bamsnap#13 · Filter by author ebioman opened on Jan 18, 2021
  6

• How to sort by base?

  enhancement
  parklab/bamsnap#12 · Filter by author xiucz opened on Jan 14, 2021
  1

  

• How to run with custom reference (es assembly)

  parklab/bamsnap#11 · Filter by author telatin opened on Jan 13, 2021
  1