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@wejlab W. Evan Johnson Lab

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    Repositories list

    24 repositories

    • BatchQC

      Public
      Batch Effects Quality Control Software
      R
      •
      Other
      •13•11•2•0•Updated Aug 28, 2026Aug 28, 2026

    • PGRR-supplementary

      Public
      Supplementary Material for PGRR Paper
      0•0•0•0•Updated Aug 12, 2026Aug 12, 2026

    • ComBatSuite

      Public
      ComBat suite of tools built upon the original sva framework
      R
      •3•0•0•0•Updated May 18, 2026May 18, 2026

    • scCombat_seq

      Public
      R
      •1•0•0•0•Updated May 18, 2026May 18, 2026

    • PGRR

      Public
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • MetaScope

      Public
      An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
      R
      •
      GNU General Public License v3.0
      •7•22•2•0•Updated Mar 12, 2026Mar 12, 2026

    • 2026_Spring_FDS

      Public
      Course materials for the Spring 2026 instance of Fundamental of Data Science (GSND 5345) at the Rutgers University School of Graduate Studies
      38•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • jlabwiki

      Public
      A wiki of knowledge for Johnson Lab members
      1•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • TBSignatureProfiler

      Public
      Profile RNA-seq data using published TB gene signatures
      tuberculosisbiomarkersbioconductor-package
      tuberculosisbiomarkersbioconductor-packagegene-signatures
      R
      •
      Other
      •13•13•2•0•Updated Dec 15, 2025Dec 15, 2025

    • LegATo

      Public
      An R-based Longitudinal mEtaGenomic Analysis Toolkit for microbiome data
      bioinformaticsanalysismetagenomics
      bioinformaticsanalysismetagenomicsbioconductormicrobiomelongitudinal
      R
      •
      Other
      •1•2•0•0•Updated Aug 25, 2025Aug 25, 2025

    • wejlab.github.io

      Public
      Repository for wejlab.github.io
      0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • animalcules

      Public
      R shiny app for interactive microbiome analysis
      R
      •
      Other
      •22•55•0•1•Updated Jun 5, 2025Jun 5, 2025

    • singleCellTK

      Public
      Interactively Analyze scRNA-Seq Data
      R
      •
      Other
      •82•0•0•0•Updated May 14, 2025May 14, 2025

    • TBSignatureProfiler-docs

      Public
      A repository to host the files for the TBSignatureProfiler website.
      0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • metascope-docs

      Public
      Repository holding documents for the MetaScope website
      0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • LegATo-docs

      Public
      Docs for the LegATo website
      0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • curatedTBExplorer

      Public
      This is the repository for the curatedTBExplorer shiny interface to view and analyze the curatedTBData
      R
      •
      Other
      •0•2•4•0•Updated Oct 2, 2024Oct 2, 2024

    • curatedTBExplorer-docs

      Public
      Documentation for the curatedTBExplorer
      0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • curatedTBData

      Public
      Curation of existing TB gene expression datasets
      R
      •
      Other
      •3•3•0•0•Updated Mar 12, 2024Mar 12, 2024

    • animalcules-docs

      Public
      0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • ASSIGN

      Public
      Adaptive Signature Selection and InteGratioN
      R
      •
      Other
      •1•2•0•1•Updated May 26, 2023May 26, 2023

    • sctk_docs

      Public
      Documentation Source for singleCellTK
      2•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • materials

      Public
      0•0•0•0•Updated Jan 11, 2020Jan 11, 2020

    • PathoStat

      Public
      The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.
      R
      •9•2•2•0•Updated Oct 22, 2018Oct 22, 2018
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