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    8 repositories

    • openfish

      Public
      GPU CRF-CTC decoding for nanopore basecalling
      C
      •4•16•1•0•Updated Aug 27, 2026Aug 27, 2026

    • git-count

      Public
      Git clone counts
      Shell
      •0•2•0•0•Updated Aug 26, 2026Aug 26, 2026

    • cdn-links

      Public
      Keep track of counts
      Shell
      •0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • minimod

      Public
      A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
      nanoporemethylationepigenetics
      nanoporemethylationepigeneticspacbiomodifications
      C
      •
      MIT License
      •1•46•4•1•Updated Aug 21, 2026Aug 21, 2026

    • Winnowmap

      Public
      Long read / genome alignment software
      C
      •
      Other
      •31•1•0•0•Updated Mar 24, 2026Mar 24, 2026

    • slow5-dorado

      Public
      fork of dorado that supports S/BLOW5
      C++
      •
      Other
      •128•1•0•0•Updated Mar 17, 2026Mar 17, 2026

    • dorado

      Public
      Oxford Nanopore's Basecaller
      C++
      •
      Other
      •128•1•0•0•Updated Feb 19, 2026Feb 19, 2026

    • cyclone-bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads (modified version for different input)
      Python
      •
      Other
      •142•0•0•0•Updated Jan 23, 2026Jan 23, 2026
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