Repositories list

• moalmanac

  Public
  Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medicine

  pythonprecision-cancer-medicinemolecular-oncology-almanac+ 1

  pythonprecision-cancer-medicinemolecular-oncology-almanacclinical-interpretation-algorithm

  HTML

  •

  GNU General Public License v2.0

  •77 forks•4444 stars•55 issues•33 pull requests•Updated Sep 4, 2026Sep 4, 2026

• moalmanac-db

  Public
  Underlying content for the Molecular Oncology Almanac's database

  precision-cancer-medicinemolecular-oncology-almanac

  precision-cancer-medicinemolecular-oncology-almanac

  Python

  •

  GNU General Public License v2.0

  •88 forks•99 stars•2828 issues•00 pull requests•Updated Sep 4, 2026Sep 4, 2026

• region-specific-approvals-sop

  Public
  An SOP for curating region-specific regulatory approvals

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 3, 2026Sep 3, 2026

• NET2.0

  Public
  Jupyter Notebook

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 24, 2026Aug 24, 2026

• unexplained_familial_cancer

  Public
  This repository (currently work in progress) is used to store the code and findings exploring genomic causes of Unexplained Familial Cancer.

  WDL

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2026Aug 21, 2026

• PatientGenomicSimilarityCode

  Public
  Python

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2026Aug 5, 2026

• SigProfilerAssignment-wrapper

  Public
  Implementation repository for SigProfilerAssignment

  Python

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• agentic-ai-analysis

  Public
  Analysis for M3A paper

  Python

  •

  GNU General Public License v2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 4, 2026Jun 4, 2026

• agentic-ai-codebase

  Public
  M3A agent code

  Python

  •

  GNU General Public License v2.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jun 4, 2026Jun 4, 2026

• moalmanac-api

  Public
  API for moalmanac db and web browser 2.0

  molecular-oncology-almanac

  molecular-oncology-almanac

  Python

  •

  GNU General Public License v2.0

  •11 fork•00 stars•77 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• moalmanac-browser

  Public
  Web portal interface for browsing the Molecular Oncology Almanac

  pythonflaskmolecular-oncology-almanac

  pythonflaskmolecular-oncology-almanac

  Python

  •

  GNU General Public License v2.0

  •11 fork•11 star•1212 issues•00 pull requests•Updated May 18, 2026May 18, 2026

• moalmanac-db-jad

  Public
  Underlying content for the Molecular Oncology Almanac's database

  Python

  •

  GNU General Public License v2.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• moalmanac-news

  Public
  News website for the Molecular Oncology Almanac

  molecular-oncology-almanac

  molecular-oncology-almanac

  HTML

  •

  GNU General Public License v2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 7, 2026May 7, 2026

• moalmanac-db-ella

  Public
  Underlying content for the Molecular Oncology Almanac's database

  Python

  •

  GNU General Public License v2.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• terra-helper

  Public
  Terra storage helper

  Python

  •

  GNU General Public License v2.0

  •11 fork•00 stars•44 issues•11 pull request•Updated Apr 7, 2026Apr 7, 2026

• EAC-multiome

  Public
  Jupyter Notebook

  •

  MIT License

  •88 forks•1717 stars•00 issues•00 pull requests•Updated Mar 10, 2026Mar 10, 2026

• pnet-simulation

  Public
  Codebase for P-NET (BiNN) simulation paper. Includes P-NET model, and scripts for preprocessing, experiments, and analysis.

  Python

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• moalmanac-docs

  Public
  Documentation for the Molecular Oncology Almanac

  molecular-oncology-almanac

  molecular-oncology-almanac

  Shell

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• snatac-rcc-manuscript

  Public
  Jupyter Notebook

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• moalmanac-matchmaking

  Public
  Template repository to perform profile-to-cell line matchmaking

  molecular-oncology-almanac

  molecular-oncology-almanac

  Python

  •

  GNU General Public License v2.0

  •00 forks•00 stars•33 issues•00 pull requests•Updated Oct 22, 2025Oct 22, 2025

• moalmanac-portal

  Public archive
  A cloud-based web portal for accessible clinical interpretation of integrative cancer genomics.

  pythonflaskmolecular-oncology-almanac

  pythonflaskmolecular-oncology-almanac

  HTML

  •

  GNU General Public License v2.0

  •33 forks•11 star•33 issues•00 pull requests•Updated Sep 3, 2025Sep 3, 2025

• moalmanac-db-kirtan-summer-2025

  Public archive
  Underlying content for the Molecular Oncology Almanac's database, Canada

  Jupyter Notebook

  •

  GNU General Public License v2.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated Jul 2, 2025Jul 2, 2025

• ped_germline_SV

  Public
  Analysis of germline SVs in pediatric cancers

  Jupyter Notebook

  •

  GNU General Public License v2.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Apr 30, 2025Apr 30, 2025

• beanie-analysis

  Public
  Code for reproducing results presented in the BEANIE paper

  Jupyter Notebook

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• beanie

  Public
  Tool for group biology estimation in single-cell RNAseq data

  bioinformaticsscrna-seqsingle-cell+ 5

  bioinformaticsscrna-seqsingle-cellrobustnesssubsamplinggene-signaturessignature-scoringdifferential-enrichment

  Python

  •

  GNU General Public License v2.0

  •22 forks•99 stars•00 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• clinicogenomics-FriendsDontLetFriends

  Public
  Directly inspired from Chenxin Li's "Friends Don't Let Friends Make Bad Graphs"

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2025Feb 4, 2025

• germline-somatic-convergence

  Public
  Pilot exploration of overlap between germline and somatic alterations in common adult solid tumors

  R

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 29, 2025Jan 29, 2025

• chek2_germline

  Public
  Analysis of germline genetic variants in CHEK2

  WDL

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 29, 2025Jan 29, 2025

• miniconda

  Public
  Dockerfiles for Miniconda

  Dockerfile

  •

  GNU General Public License v2.0

  •11 fork•66 stars•00 issues•00 pull requests•Updated Nov 5, 2024Nov 5, 2024

• comut

  Public
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

  Python

  •

  MIT License

  •2727 forks•9999 stars•1010 issues•44 pull requests•Updated Aug 1, 2024Aug 1, 2024