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@solgenomics Breedbase and Solgenomics

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    186 repositories

    • Tea

      Public
      code and database for the expression query, mining, analysis, and visualization tools
      HTML
      •
      MIT License
      •5•8•22•0•Updated Sep 10, 2026Sep 10, 2026

    • sgn

      Public
      The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites
      perl
      perl
      PLpgSQL
      •
      MIT License
      •48•78•585•14•Updated Sep 10, 2026Sep 10, 2026

    • sugarcane-industry

      Public
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Sep 8, 2026Sep 8, 2026

    • sugarcane

      Public
      PLpgSQL
      •
      MIT License
      •1•0•0•0•Updated Sep 8, 2026Sep 8, 2026

    • breedbase_dockerfile

      Public
      The Dockerfiles for breeDBase
      Dockerfile
      •
      MIT License
      •11•13•0•0•Updated Aug 27, 2026Aug 27, 2026

    • DroneImageScripts

      Public
      OpenCV scripts
      Python
      •
      MIT License
      •3•6•0•0•Updated Aug 27, 2026Aug 27, 2026

    • Cview

      Public
      A comparative genetic map viewer
      Perl
      •9•14•0•1•Updated Aug 25, 2026Aug 25, 2026

    • breedbase.org

      Public
      additional mason files for breedbase.org site
      0•0•0•0•Updated Aug 21, 2026Aug 21, 2026

    • solgenomics

      Public
      The mason components needed to run the solgenomics.net website
      MIT License
      •0•1•1•0•Updated Aug 20, 2026Aug 20, 2026

    • breedbase_portuguese

      Public
      This is a version of Breedbase written in Portuguese (Brazilian).
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Aug 15, 2026Aug 15, 2026

    • generic_expression_atlas

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2026Aug 7, 2026

    • cassea-test.breedbase.org

      Public
      The test site for the cassea expression viewer.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • tea_dockerfile

      Public template
      Docker repo for expression atlas
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • cassbase

      Public
      The mason components for the cassbase database, a variation of cassavabase for the CASS project
      Perl
      •
      MIT License
      •0•0•1•1•Updated Jul 9, 2026Jul 9, 2026

    • BrAPI-BoxPlotter

      Public
      JavaScript
      •
      MIT License
      •1•0•1•1•Updated Jun 29, 2026Jun 29, 2026

    • perl-local-lib

      Public
      Git repository for Perl local-lib for faster installs (eg. Dockerfiles)
      Perl
      •1•0•0•1•Updated Jun 10, 2026Jun 10, 2026

    • cassava

      Public
      Cassavabase - A website for Cassava research
      Perl
      •0•1•1•0•Updated May 22, 2026May 22, 2026

    • inventory.breedbase.org

      Public
      a breedbase instance for a crop agnostic inventory management system for BI OnRamp
      PLpgSQL
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • breedbase_site

      Public template
      Minimum install for Breedbase
      PLpgSQL
      •
      MIT License
      •3•4•0•0•Updated Apr 6, 2026Apr 6, 2026

    • cider.breedbase.org

      Public
      MIT License
      •1•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • Weather

      Public
      CSS
      •
      MIT License
      •1•0•7•0•Updated Mar 17, 2026Mar 17, 2026

    • apollo.breedbase.org

      Public
      docker based apollo instance
      0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • cxgn-corelibs

      Public
      Various Modules relating to SGN and Breedbase
      perl
      perl
      Perl
      •13•11•3•2•Updated Mar 4, 2026Mar 4, 2026

    • bio-chado-schema

      Public
      A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.
      Perl
      •9•3•0•0•Updated Feb 27, 2026Feb 27, 2026

    • erysimum

      Public
      Website for Erysimum genomes
      MIT License
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • milkweed

      Public
      0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • gbsappui

      Public
      A user interface for GBSapp that can be integrated into Breedbase
      Perl
      •
      MIT License
      •0•0•17•0•Updated Dec 22, 2025Dec 22, 2025

    • fernbase

      Public
      MIT License
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • nicotianabase

      Public
      Nicotiana base
      MIT License
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • musabase

      Public
      0•0•0•0•Updated Nov 19, 2025Nov 19, 2025
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