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@plevritis-lab Plevritis Lab

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    10 repositories

    • panoramic

      Public
      R
      •
      Other
      •1•3•0•0•Updated Sep 29, 2026Sep 29, 2026

    • MONTAGE

      Public
      montage R package
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 18, 2026Sep 18, 2026

    • TopoSlide

      Public
      Python
      •0•5•1•0•Updated Jun 28, 2026Jun 28, 2026

    • EPOCHS

      Public
      EPOCHS: end-to-end proteomics analysis of colocalization and heterogeneity in space
      Python
      •
      MIT License
      •0•0•1•1•Updated Apr 14, 2026Apr 14, 2026

    • dcspomic

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Dec 2, 2025Dec 2, 2025

    • spomic

      Public
      R
      •
      MIT License
      •1•1•1•0•Updated Nov 18, 2025Nov 18, 2025

    • Spatial_Permutation_and_Normalization

      Public
      Permutation analysis and normalization strategy for the colocatome paper.
      R
      •
      MIT License
      •1•3•0•0•Updated Oct 9, 2024Oct 9, 2024

    • CELESTA

      Public
      Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ…
      R
      •
      Apache License 2.0
      •13•40•14•2•Updated May 7, 2024May 7, 2024

    • remi

      Public
      The REMI package is written in R and is designed to predict ligand receptor interactions within a microenvironment given RNA-sequencing data. It regularizes com…
      HTML
      •1•5•1•0•Updated Mar 9, 2024Mar 9, 2024

    • HNSCC-atlas-alignment

      Public
      Single-cell alignment for scRNA-seq and CITE-seq U54 data
      Python
      •
      GNU General Public License v3.0
      •0•2•0•4•Updated Jul 6, 2023Jul 6, 2023
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