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@oist Okinawa Institute of Science & Technology

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    203 repositories

    • VisualStimulation

      Public
      matlab gui for vstim with psychophysics toolbox
      Jupyter Notebook
      •0•4•0•0•Updated Sep 17, 2026Sep 17, 2026

    • neuro-workflow

      Public
      Jupyter Notebook
      •
      Other
      •7•18•8•9•Updated Sep 17, 2026Sep 17, 2026

    • AntsArray

      Public
      Python
      •0•1•0•0•Updated Sep 17, 2026Sep 17, 2026

    • iSciComp

      Public
      JupyterBook: Introduction to Scientific Computation
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •3•5•0•0•Updated Sep 16, 2026Sep 16, 2026

    • ScrambledTreeBuilder

      Public
      Builds Phylogenetic Trees Showcasing Genome Scrambling
      R
      •
      Other
      •1•1•2•2•Updated Sep 16, 2026Sep 16, 2026

    • gecs

      Public
      Good Enough Coding in Science teaches software development practices for scientific projects
      sciencewebsiteteaching
      sciencewebsiteteachingreproducibility
      HTML
      •
      MIT License
      •2•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • emevo

      Public
      Simluate Embodied Evolution of Agents
      Python
      •
      Apache License 2.0
      •0•6•0•0•Updated Sep 13, 2026Sep 13, 2026

    • SiamJEPA

      Public
      Python
      •
      Other
      •0•5•0•0•Updated Sep 12, 2026Sep 12, 2026

    • GenomicBreaks

      Public
      Pairwise Alignment Breakpoint Analysis
      rcomparative-genomics
      rcomparative-genomics
      R
      •
      Other
      •3•6•21•0•Updated Sep 11, 2026Sep 11, 2026

    • plessy_multiCRAMutils

      Public
      Utilities for the multi-genome CRAM files generated by nf-core/pairgenomealign.
      Python
      •0•0•0•0•Updated Sep 11, 2026Sep 11, 2026

    • BioinfoUgrp

      Public
      OIST Bioinfo user group
      bioinformaticshpcoist
      bioinformaticshpcoist
      Shell
      •2•13•1•0•Updated Sep 11, 2026Sep 11, 2026

    • BioinfoUgrp_UnixGoodies_Images

      Public
      Singularity images with cool Unix tools to be exported as modules in HPC clusters
      Dockerfile
      •0•3•1•0•Updated Sep 9, 2026Sep 9, 2026

    • LuscombeU_nfcore_pairgenomealign_fork

      Public
      Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
      Nextflow
      •
      MIT License
      •5•0•0•0•Updated Sep 7, 2026Sep 7, 2026

    • subarashii-annotation-pipeline

      Public
      1007 genomes annotation pipeline
      Shell
      •0•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • MLcourse

      Public
      JavaScript
      •0•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • mlss2027okinawa

      Public
      Machine Learning Summer School 2027
      HTML
      •
      MIT License
      •0•1•0•0•Updated Sep 3, 2026Sep 3, 2026

    • plessy_nf_GenomicBreaks

      Public
      Draft Nextflow pipeline to convert alignment files and extract basic stats.
      Nextflow
      •1•0•0•1•Updated Sep 3, 2026Sep 3, 2026

    • luscombeu_rrnascan

      Public
      Nextflow pipeline to scan and extract rRNA reads from sequencing data
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • LuscombeU_odioica_augustus_nf

      Public
      Nextflow pipeline for o. dioica genome annotation using AUGUSTUS
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • LuscombeU_stlpreprocess

      Public
      Download and pre-process genomes for the Scrambling in the Tree of Life project
      genomedownloadfilter
      genomedownloadfilterscramblingoist
      Nextflow
      •
      MIT License
      •0•0•1•0•Updated Aug 14, 2026Aug 14, 2026

    • Chakraborty_GoCD_Configs

      Public
      Repository containing pipeline configuration files in YAML format for GoCD server configuration.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2026Aug 13, 2026

    • LaTeX-template-phd-thesis

      Public
      LaTeX Template for OIST Thesis
      TeX
      •
      MIT License
      •6•2•0•0•Updated Aug 3, 2026Aug 3, 2026

    • smartphone-robot-android

      Public
      Android development for smartphone-robot
      Kotlin
      •2•0•2•1•Updated Jul 29, 2026Jul 29, 2026

    • smartphone-robot-firmware

      Public
      Firmware for rp2040 used by smartphone-robots
      C
      •0•1•0•0•Updated Jul 28, 2026Jul 28, 2026

    • KonstantinovU_reflectometry

      Public
      Data for paper "Sensitive detection of the Rydberg transition in trapped electrons on liquid helium using radio-frequency reflectometry"
      MATLAB
      •0•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • phenotype_prediction

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Jul 2, 2026Jul 2, 2026

    • LuscombeU_Oikopleura_genome_assemblies

      Public
      List of github links for Oikopleura genome assemblies
      0•2•1•0•Updated Jun 18, 2026Jun 18, 2026

    • TER-MT-DB

      Public
      The Termite Mitogenome Database. Centralization of termite mitogenomes and assignation of unique identification code.
      Other
      •1•0•0•0•Updated Jun 5, 2026Jun 5, 2026

    • ReservoirComputing

      Public
      Echo State Network library for reservoir computing.
      pythonmachine-learningai
      pythonmachine-learningaineural-networkchaosesnrecurrent-neural-networksrnndynamical-systemsreservoir
      Jupyter Notebook
      •
      MIT License
      •0•3•0•1•Updated May 21, 2026May 21, 2026

    • BrainComputation

      Public
      Brain Computation: A Hands-on Guidebook
      Jupyter Notebook
      •3•14•0•0•Updated May 6, 2026May 6, 2026
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