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@marrlab Marr Lab

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    57 repositories

    • resilience

      Public
      Python
      •0•3•0•0•Updated Aug 21, 2026Aug 21, 2026

    • marrlab.github.io

      Public
      HTML
      •0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • causalspyne

      Public
      Python data generation tool with unobserved confounding as testbed for causal discovery and causal abstraction
      Python
      •0•3•8•1•Updated Jul 23, 2026Jul 23, 2026

    • RedTell

      Public
      Python
      •5•11•1•0•Updated Jul 6, 2026Jul 6, 2026

    • mae3d-opencell

      Public
      Python
      •
      Other
      •1•1•0•0•Updated Jun 24, 2026Jun 24, 2026

    • RECIPE

      Public
      Re-mixing Embeddings via Clustering for Patient augmEntation - Accepted at MICCAI'26
      0•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • vlm_cytomorphology_eval

      Public
      Evaluation of large vision language models on cytomorphology tasks
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 19, 2026Jun 19, 2026

    • cAItomorph

      Public
      cAItomorph: Hematological Diagnostics from Peripheral Blood Cytomorphology
      Python
      •
      MIT License
      •0•6•0•0•Updated Jun 4, 2026Jun 4, 2026

    • GenBloom

      Public
      Genetically aligned peripheral blood smear representations - Accepted at MICCAI'26
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Jun 4, 2026Jun 4, 2026

    • SCEMILA

      Public
      Single cell based explainable multiple instance learning algorithm (SCEMILA) for genetic acute myeloid leukemia subtype classification.
      Python
      •
      MIT License
      •1•9•0•0•Updated Mar 24, 2026Mar 24, 2026

    • DinoBloom

      Public
      Blood Cell Foundation Model based on DINOv2
      Python
      •
      Apache License 2.0
      •13•75•3•0•Updated Jan 29, 2026Jan 29, 2026

    • HematoFatePrediction

      Public
      Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4182
      MATLAB
      •6•21•0•1•Updated Dec 18, 2025Dec 18, 2025

    • aNCA

      Public
      Python
      •0•3•0•0•Updated Oct 6, 2025Oct 6, 2025

    • NCA-WSS

      Public
      Python
      •0•1•0•0•Updated Sep 23, 2025Sep 23, 2025

    • HistoGPT

      Public
      A vision language model for gigapixel whole slide images in histopathology
      Jupyter Notebook
      •
      Apache License 2.0
      •19•100•2•0•Updated Sep 4, 2025Sep 4, 2025

    • CAR_T_TargetExpression

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 12, 2025May 12, 2025

    • LVLM_cytomorphology_eval

      Public
      Evaluation of large vision language models on cytomorphology tasks
      0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • BatchDetect

      Public
      BatchDetect: a python package for detect systematic batch effects in datasets
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 31, 2025Mar 31, 2025

    • hNCA

      Public
      Python
      •1•2•0•0•Updated Mar 22, 2025Mar 22, 2025

    • DomainLab

      Public
      modular domain generalization: https://pypi.org/project/domainlab/
      domain-generalization-causality-deep-learning
      domain-generalization-causality-deep-learning
      Python
      •
      MIT License
      •3•47•21•18•Updated Mar 18, 2025Mar 18, 2025

    • BaSiC

      Public
      A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
      MATLAB
      •17•67•10•0•Updated Mar 12, 2025Mar 12, 2025

    • ContMIL

      Public
      Python
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • MLL23

      Public
      Jupyter Notebook
      •0•2•1•0•Updated Jan 10, 2025Jan 10, 2025

    • WBC-NCA

      Public
      Jupyter Notebook
      •1•5•1•0•Updated Aug 20, 2024Aug 20, 2024

    • MILPLE

      Public
      Python
      •0•1•0•0•Updated Apr 8, 2024Apr 8, 2024

    • initial-data-point-selection

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Feb 20, 2024Feb 20, 2024

    • pxpermute

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • SHAPR_torch

      Public
      SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
      deep-learningimage-reconstructionpytorch
      deep-learningimage-reconstructionpytorchsegmentationpersistent-homologytopological-data-analysistopological-machine-learningcubical-complexes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•41•0•0•Updated Oct 28, 2023Oct 28, 2023

    • scifAI-notebooks

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Oct 11, 2023Oct 11, 2023

    • scifAI

      Public
      scifAI: An explainable AI python framework for the analysis of multi-channel imaging data
      Python
      •
      MIT License
      •0•9•0•0•Updated Oct 11, 2023Oct 11, 2023
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