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@kumarlab-compomics Computational Cancer Genomics Lab

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    Repositories list

    8 repositories

    • LLPS_Predict

      Public
      Protein sequence and structure model to predict liquid-liquid phase separation (LLPS)
      Jupyter Notebook
      •0•0•0•0•Updated Sep 11, 2026Sep 11, 2026

    • MicroNuclei_Detection

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•1•0•0•Updated Sep 5, 2026Sep 5, 2026

    • ChromoDyn

      Public
      Modular chromatin-dynamics toolkit built on OpenMM. Simulates coarse-grained chromosome polymers refined against experimental Hi-C maps (Adam and maximum-entrop…
      Python
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • PhasedHapAssembly-nonB

      Public
      Non-B DNA motif annotation across high quality phased haplotype assemblies
      Jupyter Notebook
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • DeepCC9

      Public
      Python
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • SV_mechanism

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • structural-constraint-map

      Public
      Building a constraint map that incorporates 3D protein structure and protein motion data.
      Python
      •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • MutDTA

      Public
      Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.
      Python
      •
      The Unlicense
      •2•4•4•0•Updated Mar 4, 2025Mar 4, 2025
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