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    7 repositories

    • ampliConda

      Public
      HTML
      •
      MIT License
      •0•0•8•0•Updated Aug 11, 2026Aug 11, 2026

    • marm_metagenome_manuscript

      Public
      Code for downstream analysis (i.e., after Snakemake processing) of the shotgun sequence data in the Clayton lab marmoset metagenome manuscript.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • marm_microbiome_metabolome_manuscript

      Public
      This repo hosts the software used to analyze and generate figures for the marm_microbiome_metabolome dataset.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 8, 2026Jun 8, 2026

    • metaGnosis

      Public
      A snakemake workflow for reproducible shotgun-seq analysis, assembly, binning, and beyond.
      Python
      •
      MIT License
      •0•0•2•0•Updated Jun 8, 2026Jun 8, 2026

    • cll_mouse_microbiome_manuscript

      Public
      Code for downstream analysis (i.e., after Snakemake processing) of the shotgun sequence data in the CLL mouse microbiome manuscript.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • marm_behavior_tracking

      Public
      2024-25 Senior Design Project
      Python
      •0•0•20•0•Updated May 1, 2025May 1, 2025

    • BugSeqer

      Public
      The main goal of the project is to establish feasibility to reproduce and run 16s rRNA microbiome sequencing analysis in human.
      Shell
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated May 17, 2023May 17, 2023
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