Repositories list

• jannovar

  Public
  Annotation of VCF variants with functional impact and from databases (executable+library)

  bioinformaticsvcfvariant-annotation+ 1

  bioinformaticsvcfvariant-annotationvariant-filtration

  Java

  •

  Other

  •3333 forks•6868 stars•3232 issues•00 pull requests•Updated Sep 7, 2026Sep 7, 2026

• Q

  Public
  Q ChIP-seq peak caller

  C++

  •

  Other

  •33 forks•1818 stars•11 issue•00 pull requests•Updated Jul 17, 2024Jul 17, 2024

• asdpex

  Public
  Java

  •

  Other

  •22 forks•88 stars•11 issue•44 pull requests•Updated Dec 2, 2022Dec 2, 2022

• charite.github.io

  Public
  Charité Computational Biology Website

  CSS

  •

  GNU General Public License v2.0

  •66 forks•77 stars•00 issues•00 pull requests•Updated Jan 15, 2019Jan 15, 2019

• hyperSMURF

  Public
  Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

  Java

  •

  GNU General Public License v3.0

  •44 forks•22 stars•00 issues•00 pull requests•Updated Dec 16, 2017Dec 16, 2017

• topodombar

  Public
  Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries

  Python

  •

  BSD 2-Clause "Simplified" License

  •44 forks•11 star•00 issues•00 pull requests•Updated Nov 8, 2017Nov 8, 2017

• hyperSMURF-tutorial

  Public
  Tutorial how you can the hyperSMURF algorithm in your Java application

  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 24, 2017Apr 24, 2017

• weka-GWAVA

  Public
  Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence varia…

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 16, 2016Aug 16, 2016

• chipseqknime

  Public
  KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/

  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2016Mar 29, 2016

• jannovar_tutorial

  Public archive
  Jannovar Tutorial Applications

  Java

  •11 fork•11 star•22 issues•11 pull request•Updated May 27, 2015May 27, 2015

• jannovar_example_app

  Public archive
  Minimal Maven application using Jannovar

  Java

  •00 forks•11 star•00 issues•00 pull requests•Updated May 26, 2015May 26, 2015

• denovocaller

  Public
  Denovo Variation Caller for simple familie trios (mother, father, affected child)

  Java

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 16, 2015Jan 16, 2015

• ngspipeline

  Public
  Our NGS Pipeline using Nextflow

  BSD 3-Clause "New" or "Revised" License

  •33 forks•77 stars•00 issues•00 pull requests•Updated Dec 9, 2014Dec 9, 2014