Repositories list

• bam-matcher

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •11 fork in buschlab/bam-matcher•00 stars in buschlab/bam-matcher•00 issues in buschlab/bam-matcher•77 pull requests in buschlab/bam-matcher•Updated Oct 13, 2026Oct 13, 2026

• MtbExporter

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •00 forks in buschlab/MtbExporter•22 stars in buschlab/MtbExporter•11 issue in buschlab/MtbExporter•1010 pull requests in buschlab/MtbExporter•Updated Sep 22, 2026Sep 22, 2026

• MIRACUM-Pipe

  Public
  Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.

  R

  •

  GNU Affero General Public License v3.0

  •1515 forks in buschlab/MIRACUM-Pipe•22 stars in buschlab/MIRACUM-Pipe•00 issues in buschlab/MIRACUM-Pipe•00 pull requests in buschlab/MIRACUM-Pipe•Updated Mar 21, 2025Mar 21, 2025

• MMRd

  Public
  Predicting MMR status based on Albayrak et al. (2020)

  R

  •11 fork in buschlab/MMRd•00 stars in buschlab/MMRd•00 issues in buschlab/MMRd•00 pull requests in buschlab/MMRd•Updated Oct 30, 2024Oct 30, 2024

• sequenza

  Public
  :exclamation: This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homepage: https…

  R

  •88 forks in buschlab/sequenza•11 star in buschlab/sequenza•00 issues in buschlab/sequenza•00 pull requests in buschlab/sequenza•Updated Feb 6, 2024Feb 6, 2024

• cbioportal-core

  Public
  Legacy cBioPortal Core

  Java

  •3434 forks in buschlab/cbioportal-core•00 stars in buschlab/cbioportal-core•00 issues in buschlab/cbioportal-core•00 pull requests in buschlab/cbioportal-core•Updated Feb 2, 2024Feb 2, 2024

• MIRACUM-Pipe-singularity

  Public
  MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of t…

  bioinformaticsngsomics+ 4

  bioinformaticsngsomicsomics-pipelineprecision-oncologymedical-informatics-initiativemiracum

  R

  •

  GNU Affero General Public License v3.0

  •11 fork in buschlab/MIRACUM-Pipe-singularity•44 stars in buschlab/MIRACUM-Pipe-singularity•00 issues in buschlab/MIRACUM-Pipe-singularity•00 pull requests in buschlab/MIRACUM-Pipe-singularity•Updated Oct 24, 2023Oct 24, 2023

• copynumber

  Public
  R

  •00 forks in buschlab/copynumber•00 stars in buschlab/copynumber•00 issues in buschlab/copynumber•00 pull requests in buschlab/copynumber•Updated Oct 20, 2023Oct 20, 2023

• vep

  Public
  Recipe for VEP + Cache

  55 forks in buschlab/vep•22 stars in buschlab/vep•00 issues in buschlab/vep•00 pull requests in buschlab/vep•Updated Sep 29, 2023Sep 29, 2023

• HowTos

  Public
  Manuals and examples

  Python

  •11 fork in buschlab/HowTos•22 stars in buschlab/HowTos•00 issues in buschlab/HowTos•00 pull requests in buschlab/HowTos•Updated Sep 22, 2022Sep 22, 2022

• 2022_canine_atopic_dermatitis_paper

  Public
  R

  •11 fork in buschlab/2022_canine_atopic_dermatitis_paper•11 star in buschlab/2022_canine_atopic_dermatitis_paper•00 issues in buschlab/2022_canine_atopic_dermatitis_paper•00 pull requests in buschlab/2022_canine_atopic_dermatitis_paper•Updated Jun 29, 2022Jun 29, 2022

• bamsnap

  Public
  HTML

  •

  MIT License

  •2929 forks in buschlab/bamsnap•00 stars in buschlab/bamsnap•00 issues in buschlab/bamsnap•00 pull requests in buschlab/bamsnap•Updated Nov 24, 2021Nov 24, 2021

• NGS-tools-and-scripts

  Public
  R

  •22 forks in buschlab/NGS-tools-and-scripts•00 stars in buschlab/NGS-tools-and-scripts•00 issues in buschlab/NGS-tools-and-scripts•00 pull requests in buschlab/NGS-tools-and-scripts•Updated Jan 22, 2021Jan 22, 2021

• TF_enrichment_analysis

  Public
  COVIDomics paper: Transcription factor activity network

  R

  •33 forks in buschlab/TF_enrichment_analysis•00 stars in buschlab/TF_enrichment_analysis•00 issues in buschlab/TF_enrichment_analysis•00 pull requests in buschlab/TF_enrichment_analysis•Updated Nov 13, 2020Nov 13, 2020

• Egyptref

  Public
  Scripts and pipelines used in the generation of "An Egyptian Genome Reference"

  Perl

  •11 fork in buschlab/Egyptref•11 star in buschlab/Egyptref•00 issues in buschlab/Egyptref•00 pull requests in buschlab/Egyptref•Updated Jun 22, 2020Jun 22, 2020

• lied_egypt_genome

  Public
  Python

  •22 forks in buschlab/lied_egypt_genome•00 stars in buschlab/lied_egypt_genome•00 issues in buschlab/lied_egypt_genome•00 pull requests in buschlab/lied_egypt_genome•Updated Jun 19, 2020Jun 19, 2020

• 2020_population_genetics

  Public
  Python

  •22 forks in buschlab/2020_population_genetics•00 stars in buschlab/2020_population_genetics•00 issues in buschlab/2020_population_genetics•00 pull requests in buschlab/2020_population_genetics•Updated Jun 19, 2020Jun 19, 2020

• awesome-deepbio

  Public
  A curated list of awesome deep learning applications in the field of computational biology

  312312 forks in buschlab/awesome-deepbio•11 star in buschlab/awesome-deepbio•00 issues in buschlab/awesome-deepbio•00 pull requests in buschlab/awesome-deepbio•Updated Jul 30, 2018Jul 30, 2018

• NGS_tools

  Public
  Collection of tools for next generation sequencing analysis

  GNU General Public License v3.0

  •22 forks in buschlab/NGS_tools•00 stars in buschlab/NGS_tools•00 issues in buschlab/NGS_tools•00 pull requests in buschlab/NGS_tools•Updated May 29, 2018May 29, 2018

• usefulStuff

  Public
  Collection of useful links

  22 forks in buschlab/usefulStuff•00 stars in buschlab/usefulStuff•00 issues in buschlab/usefulStuff•00 pull requests in buschlab/usefulStuff•Updated Apr 11, 2018Apr 11, 2018