Repositories list

• afni

  Public
  Official AFNI source and documentation

  visualizationquality-controlstatistics+ 7

  visualizationquality-controlstatisticsmristatistical-inferencefmridwianatomical-mrifmri-data-analysisfmri-analysis

  C

  •

  Other

  •121121 forks•196196 stars•5555 issues•5050 pull requests•Updated Aug 28, 2026Aug 28, 2026

• afni_ci_test_data

  Public
  Roff

  •22 forks•11 star•00 issues•11 pull request•Updated Aug 28, 2026Aug 28, 2026

• afni_data

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 28, 2026Aug 28, 2026

• docker_v1

  Public
  start of notes for building AFNI docker more directly+simply

  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 26, 2026Aug 26, 2026

• afni_doc

  Public
  Documentation for the AFNI package (mainly RST to build HTML docs)

  Shell

  •22 forks•33 stars•00 issues•11 pull request•Updated Aug 25, 2026Aug 25, 2026

• aproject_p047_mefmri_coils

  Public
  Run afni_proc.py on ME-FMRI data, with particular focus on checking for potential coil issues in some datasets.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 29, 2026Jul 29, 2026

• communifti

  Public
  Libraries of functions for interacting with NIFTI datasets from various formats and packages.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 25, 2026Jun 25, 2026

• homebrew-mesa-25.3.4

  Public
  Building mesa-25.3.4 for AFNI/SUMA purposes

  Ruby

  •11 fork•11 star•00 issues•00 pull requests•Updated May 29, 2026May 29, 2026

• afni_edu_scripts

  Public
  scripts used in AFNI class data trees, plus support/initializing scripts

  Shell

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 24, 2026Apr 24, 2026

• apaper_simba

  Public
  Repository for "SIMBA: Scalable Image Modeling using a Bayesian Approach, A Consistent Framework for Including Spatial Dependencies in fMRI Studies"

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• aproject_rsfmri7T_jsb

  Public
  Processing of 7T resting state FMRI data (single echo, with reverse blip dset)

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2026Jan 15, 2026

• apaper_DAG2

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• apmulti_scripts

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• aproject_anplab_mefmri

  Public
  Scripts for ME-FMRI processing with AFNI.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• nifti_docs

  Public
  NIFTI documentation

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 18, 2025Aug 18, 2025

• aproject_realtime_fmri_amygdala

  Public
  This is a repository for scripts to use AFNI for realtime FMRI processing, for a study focusing on feedback and the amygdala

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• aproject_gall_proc

  Public
  Scripts for task FMRI data processing

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 2, 2025Jun 2, 2025

• apaper_gofigure_salmon

  Public
  A set of processing scripts for the publicly available salmon data used in the "Go Figure" draft.

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2025Mar 13, 2025

• apaper_afni_proc

  Public
  Scripts to accompany processing examples in AFNI's afni_proc.py methods description.

  Shell

  •11 fork•33 stars•00 issues•00 pull requests•Updated Dec 17, 2024Dec 17, 2024

• apaper_heritability

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2024Sep 6, 2024

• afni_proc_simple_bids_app

  Public
  First draft of making an afni_proc.py BIDS-App with "simple" afni_proc.py processing

  Shell

  •11 fork•11 star•22 issues•00 pull requests•Updated Aug 15, 2024Aug 15, 2024

• qc-demo-repo

  Public
  afni_proc.py quality control (APQC) HTML demo

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 1, 2024Aug 1, 2024

• apaper_apqc_etal

  Public
  These scripts were used to process the dataset used to demo quality control (QC) tools in AFNI (Taylor et al., 2024).

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2024May 17, 2024

• apaper_rtms_fmri_stroop

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2024May 17, 2024

• apaper_DAG1

  Public
  00 forks•22 stars•00 issues•00 pull requests•Updated Jan 10, 2024Jan 10, 2024

• apaper_highlight_narps

  Public
  Scripts related to the paper

  Shell

  •11 fork•55 stars•00 issues•00 pull requests•Updated Jul 19, 2023Jul 19, 2023

• apaper_afniqc_frontiers

  Public
  Scripts accompanying the "Demonstrating Quality Control (QC) Procedures in fMRI" project

  Shell

  •

  BSD 2-Clause "Simplified" License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jul 14, 2023Jul 14, 2023

• test_ricor

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2023Apr 7, 2023

• apaper_hrf_profiles

  Public
  Scripts accompanying Chen et al. (2022/3) work on modeling, visualizing and understanding FMRI hemodynamic response.

  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 15, 2023Feb 15, 2023

• add-afni-tutorials

  Public
  OHBM-2022 Brainhack project idea: Adding to AFNI tutorials

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 14, 2022Jun 14, 2022