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@VanLoo-lab Cancer Genomics and Evolution Laboratory

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    10 repositories

    • CAMDAC

      Public
      HTML
      •
      GNU General Public License v3.0
      •7•12•3•3•Updated Aug 31, 2026Aug 31, 2026

    • gritic

      Public
      A tool for timing complex copy number gains in cancer.
      Python
      •
      GNU Affero General Public License v3.0
      •3•22•6•0•Updated Aug 29, 2026Aug 29, 2026

    • mpnst_phase_1

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 15, 2026Aug 15, 2026

    • ASCAT.sc

      Public
      HTML
      •
      GNU General Public License v3.0
      •16•27•1•4•Updated Jul 30, 2026Jul 30, 2026

    • Arborist_Data

      Public
      The data accompaniment to the Arborist manuscript.
      0•1•0•0•Updated May 11, 2026May 11, 2026

    • DNAStream

      Public
      DNAStream is an HDF5-based data structure for efficient storage, indexing, logging and retrieval of processed DNA sequencing data across multiple sequencing mod…
      Python
      •0•1•0•0•Updated Mar 12, 2026Mar 12, 2026

    • SomaticKoN_NF

      Public
      A flexible somatic mutation calling pipeline using K-of-N consensus from multiple variant callers.
      Shell
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • ascat

      Public
      ASCAT R package
      HTML
      •94•204•7•1•Updated Feb 12, 2026Feb 12, 2026

    • Arborist

      Public
      A tool to rank SNV phylogenies inferred from bulk DNA sequencing via low-pass scDNA-seq data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated Dec 4, 2025Dec 4, 2025

    • gritic_analysis

      Public
      Analysis scripts accompanying the manuscript for 'The history of chromosomal instability in genome doubled tumors'.
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 21, 2024Jun 21, 2024
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