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@SysBioOncology Systems Biology for Oncology

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    10 repositories

    • SysBioOncology.github.io

      Public
      CSS
      •0•0•0•0•Updated Jun 16, 2026Jun 16, 2026

    • AutoencoderABM

      Public
      Repository to reproduce results and figures for proceedings submission
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • ActiveLearning_MechanisticModels_CXCL9

      Public
      R
      •0•0•0•0•Updated Mar 15, 2026Mar 15, 2026

    • RaCInG

      Public
      The random graph model to infer cell-cell communication networks based on bulk RNA-seq data. Contains the code used for the "Mathematically mapping the network …
      HTML
      •
      Apache License 2.0
      •2•7•0•0•Updated Jul 9, 2025Jul 9, 2025

    • SPoTLIghT

      Public
      SPoTLIghT, a computational framework to extract interpretable features of the spatial distribution of multiple cell types by combining unannotated pathology ima…
      Python
      •
      Apache License 2.0
      •0•9•0•0•Updated May 21, 2025May 21, 2025

    • spatial_features_manuscript

      Public
      Code used in the paper 'Integrating histopathology and transcriptomics for spatial tumor microenvironment profiling in a melanoma case study' by Lapuente-Santan…
      HTML
      •0•3•0•0•Updated Nov 8, 2024Nov 8, 2024

    • PCABM_ADT

      Public
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Sep 25, 2024Sep 25, 2024

    • BilayerMicrofluidicsAnalysis_JoVE

      Public
      Code used to read and analysis the fluorescent plugs data for the JoVE paper
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2023Aug 21, 2023

    • ABM_prostate_cancer_development

      Public
      Code used in the paper "Multicellular agent-based model of prostate tumor onset and development" by Passier et al.
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Feb 14, 2023Feb 14, 2023

    • Lungmarkerstudy_diagnosticalgorithm

      Public
      Code used in the paper 'Liquid biopsy-based decision support algorithms for diagnosis and subtyping of lung cancer' by Visser et al.
      Python
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Oct 24, 2022Oct 24, 2022
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