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    23 repositories

    • pylib

      Public
      Personal python library developed by Yufeng
      Python
      •0•0•0•0•Updated Jun 18, 2026Jun 18, 2026

    • MMB

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 15, 2026Jun 15, 2026

    • EM-H01-human-single-neuron

      Public
      Repository for improving morphology and predicting further information of EM H01 datasets
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • HumanMorphoMap

      Public
      Project for constructing a statistical morphology map of human cortical cells
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 26, 2026Apr 26, 2026

    • NeuroXiv2

      Public
      Python
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • neuron_seg_human

      Public
      Repository for neuronal image segmentation of human using nnUNet
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 18, 2026Feb 18, 2026

    • BrainParcellation

      Public
      Tools for generating whole brain parcellation through ensembled morphological features
      Python
      •
      MIT License
      •0•3•0•0•Updated Jun 18, 2025Jun 18, 2025

    • Gold_Silver_Bronze

      Public
      Gold, Silver, Bronze Standard for Quality Control of Neuron Reconstruction
      Python
      •0•0•0•0•Updated May 12, 2025May 12, 2025

    • SWC_Quality_Control

      Public
      A tool for batch quality control of swc files
      C++
      •0•0•0•0•Updated May 12, 2025May 12, 2025

    • full_spectrum_sources

      Public
      Refactored source codes for the full spectrum project
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 23, 2024Oct 23, 2024

    • NeuroXiv

      Public
      Python
      •
      MIT License
      •1•6•0•0•Updated Aug 30, 2024Aug 30, 2024

    • v3d-py-helper

      Public
      Make Vaa3D functions accessible for high-performance python computation.
      image-processinghigh-performance-computingneuron-morphology
      image-processinghigh-performance-computingneuron-morphologyvaa3d
      Cython
      •
      MIT License
      •1•6•1•0•Updated Aug 24, 2024Aug 24, 2024

    • Ensemble-Cut

      Public
      Enhanced G-Cut algorithm on automated segmentation of interweaving neurons
      linear-programmingneuron-morphologyneuron-tracing
      linear-programmingneuron-morphologyneuron-tracing
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 5, 2024Aug 5, 2024

    • platform_paper_sources

      Public
      Repository for data mining codes of platform paper
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • ManifoldAnalysis

      Public
      Find the optimal feature subspace with DBSCAN. Analysis of single neuron morphologies and neuron type classification
      Python
      •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • brain-loop-search

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • neuron-image-denoise-py

      Public
      The 3D neuron image denoising filter cythonized.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • neuron-mis-pruning

      Public
      MIT License
      •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • plugin-neuron-image-denoise

      Public
      Remove background and flare noise for neuron images, boost automatic reconstruction
      pluginv3d
      pluginv3d
      C++
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2023Mar 18, 2023

    • v3dx-docker

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jan 26, 2023Jan 26, 2023

    • consensus_swc

      Public
      Derived from xiaoxiaol's consensus_skeleton_2
      C++
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2022Aug 13, 2022

    • neutube

      Public
      v3d plugin based on neutube auto tracing source
      C++
      •0•0•0•0•Updated Jul 31, 2022Jul 31, 2022

    • TReMAP

      Public
      C++
      •
      MIT License
      •1•1•0•0•Updated Jul 31, 2022Jul 31, 2022
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