Repositories list

• pituitary-nfpa

  Public
  Project for predicting recurrence in non-functioning pituitary adenomas

  Python

  •00 forks in QTIM-Lab/pituitary-nfpa•00 stars in QTIM-Lab/pituitary-nfpa•00 issues in QTIM-Lab/pituitary-nfpa•00 pull requests in QTIM-Lab/pituitary-nfpa•Updated Oct 17, 2026Oct 17, 2026

• ESPWA

  Public
  ER status classification in H&E WSI

  Python

  •

  GNU General Public License v3.0

  •00 forks in QTIM-Lab/ESPWA•00 stars in QTIM-Lab/ESPWA•00 issues in QTIM-Lab/ESPWA•00 pull requests in QTIM-Lab/ESPWA•Updated Sep 28, 2026Sep 28, 2026

• cervical-cancer-ai

  Public
  Umbrella site + docs

  CSS

  •00 forks in QTIM-Lab/cervical-cancer-ai•00 stars in QTIM-Lab/cervical-cancer-ai•00 issues in QTIM-Lab/cervical-cancer-ai•00 pull requests in QTIM-Lab/cervical-cancer-ai•Updated Sep 26, 2026Sep 26, 2026

• GASegMedSAM

  Public
  Python

  •00 forks in QTIM-Lab/GASegMedSAM•00 stars in QTIM-Lab/GASegMedSAM•00 issues in QTIM-Lab/GASegMedSAM•00 pull requests in QTIM-Lab/GASegMedSAM•Updated Sep 25, 2026Sep 25, 2026

• GA_classifier

  Public
  Python

  •00 forks in QTIM-Lab/GA_classifier•00 stars in QTIM-Lab/GA_classifier•00 issues in QTIM-Lab/GA_classifier•00 pull requests in QTIM-Lab/GA_classifier•Updated Sep 25, 2026Sep 25, 2026

• Monai-Deploy

  Public
  Investigating Monai Deploy in a series of incrementially increasingly complex examples

  Python

  •00 forks in QTIM-Lab/Monai-Deploy•00 stars in QTIM-Lab/Monai-Deploy•00 issues in QTIM-Lab/Monai-Deploy•00 pull requests in QTIM-Lab/Monai-Deploy•Updated Sep 24, 2026Sep 24, 2026

• qtim-lab.github.io

  Public
  A repository for the public-facing web page of the Quantiative Tumor Imaging Lab at the Martinos Center.

  HTML

  •

  MIT License

  •33 forks in QTIM-Lab/qtim-lab.github.io•44 stars in QTIM-Lab/qtim-lab.github.io•00 issues in QTIM-Lab/qtim-lab.github.io•11 pull request in QTIM-Lab/qtim-lab.github.io•Updated Sep 4, 2026Sep 4, 2026

• Brain-Mets-Seg

  Public
  A repository containing code to segment brain metastases on T1 contrast enhanced MR scans.

  Python

  •

  Apache License 2.0

  •00 forks in QTIM-Lab/Brain-Mets-Seg•22 stars in QTIM-Lab/Brain-Mets-Seg•11 issue in QTIM-Lab/Brain-Mets-Seg•00 pull requests in QTIM-Lab/Brain-Mets-Seg•Updated Sep 1, 2026Sep 1, 2026

• efficient-tile-selection

  Public
  Python

  •

  Apache License 2.0

  •00 forks in QTIM-Lab/efficient-tile-selection•11 star in QTIM-Lab/efficient-tile-selection•00 issues in QTIM-Lab/efficient-tile-selection•00 pull requests in QTIM-Lab/efficient-tile-selection•Updated Aug 16, 2026Aug 16, 2026

• Keratitis-DB_Curation

  Public
  Python

  •

  MIT License

  •00 forks in QTIM-Lab/Keratitis-DB_Curation•00 stars in QTIM-Lab/Keratitis-DB_Curation•00 issues in QTIM-Lab/Keratitis-DB_Curation•00 pull requests in QTIM-Lab/Keratitis-DB_Curation•Updated Aug 14, 2026Aug 14, 2026

• OPH-Trustworthiness-of-saliency-maps

  Public
  Python

  •00 forks in QTIM-Lab/OPH-Trustworthiness-of-saliency-maps•00 stars in QTIM-Lab/OPH-Trustworthiness-of-saliency-maps•00 issues in QTIM-Lab/OPH-Trustworthiness-of-saliency-maps•00 pull requests in QTIM-Lab/OPH-Trustworthiness-of-saliency-maps•Updated Aug 10, 2026Aug 10, 2026

• martinos_summer_scholars

  Public
  Notebooks for the Martinos Summer Scholars Program

  Jupyter Notebook

  •00 forks in QTIM-Lab/martinos_summer_scholars•00 stars in QTIM-Lab/martinos_summer_scholars•00 issues in QTIM-Lab/martinos_summer_scholars•00 pull requests in QTIM-Lab/martinos_summer_scholars•Updated Jul 21, 2026Jul 21, 2026

• procancer_fl

  Public
  00 forks in QTIM-Lab/procancer_fl•00 stars in QTIM-Lab/procancer_fl•00 issues in QTIM-Lab/procancer_fl•00 pull requests in QTIM-Lab/procancer_fl•Updated Jun 22, 2026Jun 22, 2026

• medsam_OCT_layerseg

  Public
  This model creates a single combined segmentation mask for the RNFL, GCL, and IPL layers for OCT bscans. It was first trained on Topcon Maestro and then spectra…

  Python

  •00 forks in QTIM-Lab/medsam_OCT_layerseg•00 stars in QTIM-Lab/medsam_OCT_layerseg•00 issues in QTIM-Lab/medsam_OCT_layerseg•00 pull requests in QTIM-Lab/medsam_OCT_layerseg•Updated Jun 17, 2026Jun 17, 2026

• Topcon_OCT_Export_Tool

  Public
  Using Topcon's Export Tool to Digest and get FDA info exported to DICOMs

  PowerShell

  •00 forks in QTIM-Lab/Topcon_OCT_Export_Tool•00 stars in QTIM-Lab/Topcon_OCT_Export_Tool•00 issues in QTIM-Lab/Topcon_OCT_Export_Tool•00 pull requests in QTIM-Lab/Topcon_OCT_Export_Tool•Updated Jun 3, 2026Jun 3, 2026

• mr-series-selection

  Public
  Series selection, originally for MR Lumbar Spine

  Python

  •

  MIT License

  •00 forks in QTIM-Lab/mr-series-selection•00 stars in QTIM-Lab/mr-series-selection•00 issues in QTIM-Lab/mr-series-selection•00 pull requests in QTIM-Lab/mr-series-selection•Updated Jun 2, 2026Jun 2, 2026

• preprocessing

  Public
  `preprocessing` is a python library and CLI tool designed for the purpose of preprocessing MRI data for Deep Learning at QTIM.

  Jupyter Notebook

  •

  MIT License

  •00 forks in QTIM-Lab/preprocessing•22 stars in QTIM-Lab/preprocessing•00 issues in QTIM-Lab/preprocessing•00 pull requests in QTIM-Lab/preprocessing•Updated Jun 2, 2026Jun 2, 2026

• nnunet_wrapper

  Public
  Python

  •

  MIT License

  •00 forks in QTIM-Lab/nnunet_wrapper•00 stars in QTIM-Lab/nnunet_wrapper•00 issues in QTIM-Lab/nnunet_wrapper•00 pull requests in QTIM-Lab/nnunet_wrapper•Updated Jun 2, 2026Jun 2, 2026

• faf_ga_segmentation_pipeline

  Public
  Python

  •00 forks in QTIM-Lab/faf_ga_segmentation_pipeline•00 stars in QTIM-Lab/faf_ga_segmentation_pipeline•00 issues in QTIM-Lab/faf_ga_segmentation_pipeline•00 pull requests in QTIM-Lab/faf_ga_segmentation_pipeline•Updated Apr 17, 2026Apr 17, 2026

• PAVE-Pathology

  Public
  Python

  •524524 forks in QTIM-Lab/PAVE-Pathology•00 stars in QTIM-Lab/PAVE-Pathology•00 issues in QTIM-Lab/PAVE-Pathology•00 pull requests in QTIM-Lab/PAVE-Pathology•Updated Mar 14, 2026Mar 14, 2026

• Conditional-Diffusion-Editing-basic

  Public
  Python

  •00 forks in QTIM-Lab/Conditional-Diffusion-Editing-basic•00 stars in QTIM-Lab/Conditional-Diffusion-Editing-basic•00 issues in QTIM-Lab/Conditional-Diffusion-Editing-basic•00 pull requests in QTIM-Lab/Conditional-Diffusion-Editing-basic•Updated Mar 11, 2026Mar 11, 2026

• aireadi_fovea_annotation

  Public
  aireadi_fovea_annotation app for ground truths

  HTML

  •00 forks in QTIM-Lab/aireadi_fovea_annotation•00 stars in QTIM-Lab/aireadi_fovea_annotation•00 issues in QTIM-Lab/aireadi_fovea_annotation•00 pull requests in QTIM-Lab/aireadi_fovea_annotation•Updated Feb 12, 2026Feb 12, 2026

• tme-wsi

  Public
  Python

  •

  Apache License 2.0

  •00 forks in QTIM-Lab/tme-wsi•11 star in QTIM-Lab/tme-wsi•00 issues in QTIM-Lab/tme-wsi•00 pull requests in QTIM-Lab/tme-wsi•Updated Feb 9, 2026Feb 9, 2026

• fastapi_saml

  Public
  FastAPI and SAML Integration

  Python

  •

  MIT License

  •00 forks in QTIM-Lab/fastapi_saml•00 stars in QTIM-Lab/fastapi_saml•00 issues in QTIM-Lab/fastapi_saml•00 pull requests in QTIM-Lab/fastapi_saml•Updated Jan 26, 2026Jan 26, 2026

• ssl_and_conformal_prediction_cervical_cancer_screening

  Public
  Lessons Learned Applying Self-Supervision and Conformal Prediction to Cervical Cancer Screening

  00 forks in QTIM-Lab/ssl_and_conformal_prediction_cervical_cancer_screening•00 stars in QTIM-Lab/ssl_and_conformal_prediction_cervical_cancer_screening•00 issues in QTIM-Lab/ssl_and_conformal_prediction_cervical_cancer_screening•00 pull requests in QTIM-Lab/ssl_and_conformal_prediction_cervical_cancer_screening•Updated Jan 26, 2026Jan 26, 2026

• https_server

  Public
  Fork of this so QTIM has it.

  Python

  •11 fork in QTIM-Lab/https_server•00 stars in QTIM-Lab/https_server•00 issues in QTIM-Lab/https_server•00 pull requests in QTIM-Lab/https_server•Updated Jan 7, 2026Jan 7, 2026

• dl-prediction-brca-tiph-ext

  Public
  Implementation of the paper "Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology" by Tiago Gonçalves, Dagoberto Puli…

  Python

  •

  MIT License

  •11 fork in QTIM-Lab/dl-prediction-brca-tiph-ext•11 star in QTIM-Lab/dl-prediction-brca-tiph-ext•00 issues in QTIM-Lab/dl-prediction-brca-tiph-ext•00 pull requests in QTIM-Lab/dl-prediction-brca-tiph-ext•Updated Jan 3, 2026Jan 3, 2026

• DBT-DINO

  Public
  Python

  •

  MIT License

  •11 fork in QTIM-Lab/DBT-DINO•33 stars in QTIM-Lab/DBT-DINO•00 issues in QTIM-Lab/DBT-DINO•00 pull requests in QTIM-Lab/DBT-DINO•Updated Dec 19, 2025Dec 19, 2025

• ga_segmentation_app

  Public
  A web-based application for annotating medical images with vertical line markers.

  Jupyter Notebook

  •00 forks in QTIM-Lab/ga_segmentation_app•00 stars in QTIM-Lab/ga_segmentation_app•00 issues in QTIM-Lab/ga_segmentation_app•00 pull requests in QTIM-Lab/ga_segmentation_app•Updated Dec 3, 2025Dec 3, 2025

• federatedLearning_glaucoma_segmentation

  Public
  Federated Learning Optic Disc and Cup Segmentation Model for Glaucoma Monitoring in Color Fundus Photographs(CFPs)

  Python

  •11 fork in QTIM-Lab/federatedLearning_glaucoma_segmentation•55 stars in QTIM-Lab/federatedLearning_glaucoma_segmentation•00 issues in QTIM-Lab/federatedLearning_glaucoma_segmentation•00 pull requests in QTIM-Lab/federatedLearning_glaucoma_segmentation•Updated Nov 21, 2025Nov 21, 2025