OmicsML repositories

21 repositories

dance
Public
DANCE: a deep learning library and benchmark platform for single-cell analysis
python data-science benchmark
python data-science benchmark machine-learning bioinformatics deep-learning computational-biology dance single-cell multimodality
Python
•
BSD 2-Clause "Simplified" License
•37•388•26•8•Updated Oct 5, 2026Oct 5, 2026
awesome-foundation-model-single-cell-papers
Public
survey awesome-list single-cell-multiomics
survey awesome-list single-cell-multiomics large-language-models ai-virtual-cell single-cell-foundation-model biological-foundation-model
MIT License
•65•590•0•0•Updated Oct 3, 2026Oct 3, 2026
scLinguist
Public
The official repo for scLinguist
Python
•
MIT License
•1•12•2•0•Updated Mar 25, 2026Mar 25, 2026
awesome-genetic-perturbation-papers
Public
0•8•0•0•Updated Aug 20, 2025Aug 20, 2025
Mem-GAN
Public
A generative model for pseudo membrane generation of single-cell imaging in fluorescent microscopy
Python
•
MIT License
•0•8•0•0•Updated Jun 28, 2025Jun 28, 2025
awesome-AI_Scientist-agents-biology-papers
Public
4•58•6•0•Updated Apr 20, 2025Apr 20, 2025
awesome-multimodal-multiomic-multiscale-papers
Public
1•2•0•1•Updated Apr 20, 2025Apr 20, 2025
awesome-deep-learning-single-cell-papers
Public
Apache License 2.0
•119•868•13•6•Updated Apr 20, 2025Apr 20, 2025
awesome-sythetic-single-cell-data-papers
Public
0•1•0•0•Updated Apr 20, 2025Apr 20, 2025
awesome-foundation-model-DNA-papers
Public
0•3•0•0•Updated Jan 13, 2025Jan 13, 2025
test.io
Public
test
0•0•0•0•Updated Sep 22, 2024Sep 22, 2024
SpatialCTD
Public
A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution
Jupyter Notebook
•
MIT License
•1•44•2•0•Updated Sep 15, 2024Sep 15, 2024
scDiff
Public
scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
Python
•
MIT License
•4•34•3•0•Updated Aug 13, 2024Aug 13, 2024
focus
Public
Python
•0•6•2•0•Updated Aug 3, 2024Aug 3, 2024
scLLMBench
Public
scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking
MIT License
•1•0•0•0•Updated Apr 8, 2024Apr 8, 2024
CellPLM
Public
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
Jupyter Notebook
•
BSD 2-Clause "Simplified" License
•15•107•10•0•Updated Mar 28, 2024Mar 28, 2024
awesome-molecule-protein-pretrain-papers
Public
5•48•0•1•Updated Mar 11, 2024Mar 11, 2024
scMoMem
Public
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Feb 9, 2024Feb 9, 2024
scMoFormer
Public
Single-Cell Multimodal Prediction via Transformer
Python
•
MIT License
•4•28•2•0•Updated Feb 7, 2024Feb 7, 2024
dance-tutorials
Public
Jupyter Notebook
•
MIT License
•0•5•1•0•Updated Nov 13, 2023Nov 13, 2023
awesome-bio-chatgpt
Public
MIT License
•0•22•0•0•Updated Apr 27, 2023Apr 27, 2023

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OmicsML

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21 repositories

dance

awesome-foundation-model-single-cell-papers

scLinguist

awesome-genetic-perturbation-papers

Mem-GAN

awesome-AI_Scientist-agents-biology-papers

awesome-multimodal-multiomic-multiscale-papers

awesome-deep-learning-single-cell-papers

awesome-sythetic-single-cell-data-papers

awesome-foundation-model-DNA-papers

test.io

SpatialCTD

scDiff

focus

scLLMBench

CellPLM

awesome-molecule-protein-pretrain-papers

scMoMem

scMoFormer

dance-tutorials

awesome-bio-chatgpt

Repositories list

21 repositories