Skip to content

@GaitiLab GaitiLab

Change the repository type filter

All

    Repositories list

    14 repositories

    • scrnaseq-cellcomm-pipeline

      Public
      Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.
      Nextflow
      •
      MIT License
      •2•5•0•0•Updated Jun 19, 2026Jun 19, 2026

    • containers

      Public
      Dockerfile
      •0•0•0•0•Updated Jun 5, 2026Jun 5, 2026

    • scrnaseq-cellcomm

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 22, 2025Nov 22, 2025

    • GaitiLabUtils

      Public
      Functions for R-projects
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • gbm_manuscript

      Public
      Code for paper "Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration"
      gbmomics-analysis
      gbmomics-analysis
      R
      •
      MIT License
      •1•2•0•0•Updated Mar 7, 2025Mar 7, 2025

    • scRNAseq_pipeline

      Public
      R
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • GBMutils

      Public
      Helper functions for GBM project
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 28, 2024Nov 28, 2024

    • scRRBS_pipeline

      Public
      Python
      •0•1•0•0•Updated Jan 15, 2024Jan 15, 2024

    • nf-processes

      Public
      modules for processing and analyzing single cell data using Nextflow
      bioinformaticssingle-cellnextflow-pipelines
      bioinformaticssingle-cellnextflow-pipelines
      Nextflow
      •1•3•0•0•Updated Mar 6, 2023Mar 6, 2023

    • LineageTrees

      Public
      Python
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • DMR_pipeline

      Public
      R
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • ChromHMM

      Public
      Shell
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • Cell_module_score

      Public
      R
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • CNV_profiler

      Public
      R
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.