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    19 repositories

    • SC-multiomics

      Public
      R
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • autolamella

      Public archive
      autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
      Python
      •
      MIT License
      •16•19•0•1•Updated Jul 24, 2025Jul 24, 2025

    • fibsem

      Public archive
      A universal API for FIBSEM control
      Python
      •
      MIT License
      •16•32•14•4•Updated Jun 26, 2025Jun 26, 2025

    • openfibsem-docs

      Public archive
      Documentation site for the OpenFIBSEM project
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • juno

      Public
      juno is a simulation package for optical system design using full wave propagation.
      Jupyter Notebook
      •
      MIT License
      •4•65•21•1•Updated Feb 22, 2024Feb 22, 2024

    • napari-openfibsem

      Public archive
      Python
      •
      MIT License
      •1•3•0•0•Updated Feb 1, 2024Feb 1, 2024

    • salami

      Public archive
      salami is a python package for volume electron microscopy
      Python
      •
      MIT License
      •2•5•5•0•Updated Oct 18, 2023Oct 18, 2023

    • openCLEM

      Public
      A universal API for Light Microscopy
      Jupyter Notebook
      •
      MIT License
      •1•1•20•0•Updated Oct 18, 2023Oct 18, 2023

    • bandpass-filter-gui

      Public
      A simple GUI to visualize bandpass filtering with different parameters.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2023Sep 10, 2023

    • imp_preprocessing_pipelines

      Public
      Pipelines to create neuroglancer formats from EM data, along with segmentations or object lists. Raw output can be used in neuroglancer, or used in IMP project …
      cryo-emdata-conversionneuroglancer
      cryo-emdata-conversionneuroglancer
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

    • vulcan

      Public
      grayscale lithography
      Jupyter Notebook
      •
      MIT License
      •0•4•2•0•Updated Apr 18, 2023Apr 18, 2023

    • piescope

      Public
      Back end library for PIE-scope integrated cryo-correlative light and FIB/SEM microscopy
      Python
      •
      MIT License
      •0•3•0•13•Updated Feb 11, 2023Feb 11, 2023

    • IMP

      Public
      Integrated Microscopy and Proteomics
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • cryoglancerLandingPage

      Public
      Entry web portal to select data for viewing, or start processing own data, for the cryoglancer.
      TypeScript
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • imagereg

      Public
      GPU accelerated image registration
      Python
      •1•3•0•1•Updated Oct 3, 2022Oct 3, 2022

    • piescope_gui

      Public
      GUI for DeMarco lab FIB-SEM controls.
      Python
      •
      GNU General Public License v3.0
      •0•7•0•1•Updated Sep 27, 2022Sep 27, 2022

    • correlateim

      Public
      Correlate images using matched control points. Based on https://github.com/adal02/cpselect
      Python
      •
      MIT License
      •4•3•2•0•Updated Oct 14, 2020Oct 14, 2020

    • hachiko

      Public
      An extremely simple asyncio-compatible wrapper around Watchdog.
      Python
      •
      MIT License
      •15•1•0•0•Updated Mar 10, 2020Mar 10, 2020

    • 3DCT

      Public
      This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB du…
      Python
      •
      GNU General Public License v3.0
      •5•2•0•0•Updated Oct 28, 2019Oct 28, 2019
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