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    23 repositories

    • neuroglancer-demo

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •380•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • MaterializationEngine

      Public
      Python
      •
      MIT License
      •5•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • AnnotationEngine

      Public
      A flask app rest interface for adding annotations to a cloud volume segmentation
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • bcio-articles

      Public
      JavaScript
      •0•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •380•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • navis

      Public
      Python library for analysis of neuroanatomical data.
      Python
      •
      GNU General Public License v3.0
      •37•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • bcio-discussion

      Public
      Discussion about regions, cell types, papers etc.
      0•0•0•0•Updated May 31, 2023May 31, 2023

    • workspace

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 23, 2023May 23, 2023

    • pytorch-3dunet

      Public
      3D U-Net model for volumetric semantic segmentation written in pytorch
      Jupyter Notebook
      •
      MIT License
      •563•0•0•0•Updated May 11, 2023May 11, 2023

    • napari

      Public
      napari: a fast, interactive, multi-dimensional image viewer for python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •533•0•0•0•Updated May 11, 2023May 11, 2023

    • connectomics-vis-survey.github.io

      Public
      Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics
      JavaScript
      •2•0•0•0•Updated Jun 8, 2022Jun 8, 2022

    • neuroglancer-json-schemas

      Public
      JSON Schemas for neuroglancer data structures
      Python
      •1•0•0•0•Updated Feb 16, 2022Feb 16, 2022

    • react-neuroglancer

      Public
      React component wrapper for neuroglancer
      JavaScript
      •5•0•0•0•Updated Jun 18, 2021Jun 18, 2021

    • AnnotationFrameworkClient

      Public
      Python
      •18•0•0•0•Updated Mar 12, 2021Mar 12, 2021

    • OFS-EM-Connectomics

      Public
      Code and data for the 2021 Open for Science tutorial for EM connectomics.
      Jupyter Notebook
      •
      Other
      •4•0•0•0•Updated Mar 10, 2021Mar 10, 2021

    • circuitmap

      Public
      Django application serving data for synapse-guided circuit mapping in CATMAID
      Python
      •2•3•1•0•Updated Apr 9, 2020Apr 9, 2020

    • CATMAID

      Public
      Collaborative Annotation Toolkit for Massive Amounts of Image Data
      JavaScript
      •
      GNU General Public License v3.0
      •60•0•0•0•Updated Oct 29, 2019Oct 29, 2019

    • pymaid

      Public
      Collection of Python 3 tools to work with neuron data from CATMAID servers
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Oct 9, 2019Oct 9, 2019

    • fafbseg-py

      Public
      Tools to work with manual and auto-segmented data in FAFB
      Python
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Oct 7, 2019Oct 7, 2019

    • CloudVolumeServer

      Public
      Flask application to serve data via CloudVolume
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • catpy

      Public
      Python client for the CATMAID API
      Python
      •
      MIT License
      •3•0•0•0•Updated Sep 23, 2019Sep 23, 2019

    • arbor

      Public
      A python implementation of (some of) Arbor.js and related tools
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 2, 2018Dec 2, 2018

    • catalysis

      Public
      Python tools for interacting with CATMAID
      Python
      •3•0•0•0•Updated Oct 18, 2018Oct 18, 2018
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