Skip to content

add deployment script for UAT setup #14

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
AswinPalaniappa-OC wants to merge 2 commits into
base: dkube-installer-2.1.6.10
Choose a base branch
from
Open

add deployment script for UAT setup #14

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
a019ec7
add deployment script for UAT setup
AswinPalaniappa-OC Jan 17, 2021
f6bb908
curl fixes
AswinPalaniappa-OC Feb 4, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
114 changes: 114 additions & 0 deletions roche/deploymentScript_UAT.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,114 @@
#!/bin/bash

set -e

# --> SCRIPT IS CONFIGURED TO RUN ON ROCHE UAT SETUP <--

# Prints on stdout in colour fonts
RED='\033[0;31m'
GREEN='\033[0;32m'
NC='\033[0m'

#******************************************************#
# USER DEFINED VARIABLES #
#******************************************************#
#Fill corresponding value between double quotes
TOKEN=""
#FSx related variables
HOMEDIR=""
MOUNTNAME=""
VOLUMEHANDLE=${HOMEDIR}
#Fill the base domain prefixed with https://
#Example: https://www.uat.us.mlaas.apollo.roche.com
BASEDOMAIN=""

printf "${GREEN}\nPatching dkube-platform-cfg file ...${NC}\n"
kubectl get cm dkube-platform-cfg -n dkube -o yaml > cm-old.yaml
kubectl get cm dkube-platform-cfg -n dkube -o json > cm-old.json

#Backup old config file
cp cm-old.json cm-new.json

printf "Backup of dkube-platform-cfg is saved as cm-old.json and cm-old.yaml\n"

jq '.data."config.json"' -r cm-new.json > tmp && mv tmp cm-new.json

#Remove dkube rstudio images
jq 'del(.frameworks[].versions[] | select(.caps[0] == "r-ide"))' cm-new.json > tmp && mv tmp cm-new.json

#Add base domain
jq '.access."base-domain" = "https://www.uat.us.mlaas.apollo.roche.com"' cm-new.json > tmp && mv tmp cm-new.json

#Add jupyter images
jq '.frameworks[3] += {"name":"jupyter", "versions":[]}' cm-new.json > tmp && mv tmp cm-new.json
jq '.frameworks[3].versions += [{"name":"python36", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python36", "port":"8000", "ssl":"false", "caps":[ "jnb-ide"]},{"name":"python36-R351", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python36-R351", "port":"8000", "ssl":"false", "caps":[ "jnb-ide"]},{"name":"python37-R361", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python37-R361", "port":"8000", "ssl":"false", "caps":[ "jnb-ide"]},{"name":"python37", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python37", "port":"8000", "ssl":"true", "caps":[ "jnb-ide"]}]' cm-new.json > tmp && mv tmp cm-new.json

#Add jupyterlab images
jq '.frameworks[4] += {"name":"jupyterlab", "versions":[]}' cm-new.json > tmp && mv tmp cm-new.json
jq '.frameworks[4].versions += [{"name":"tf2.0-py38-cpu", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab-tf2:cpu-tf2", "port":"8000", "ssl":"true", "caps":[ "jlab-ide"]},{"name":"tf2.0-py38-gpu", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab-tf2:gpu-py38", "port":"8000", "ssl":"true", "caps":[ "jlab-ide"]},{"name":"tf2.0-py37-cpu", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab-tf2:cpu-py37", "port":"8000", "ssl":"true", "caps":[ "jlab-ide"]},{"name":"tf2.0-py37-gpu", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab-tf2:gpu-py37", "port":"8000", "ssl":"true", "caps":[ "jlab-ide"]},{"name":"python36", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python36", "port":"8000", "ssl":"false", "caps":[ "jlab-ide"]},{"name":"python36-R351", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python36-R351", "port":"8000", "ssl":"false", "caps":[ "jlab-ide"]},{"name":"python37-R361", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python37-R361", "port":"8000", "ssl":"false", "caps":[ "jlab-ide"]},{"name":"python37", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/jupyterlab:python37", "port":"8000", "ssl":"true", "caps":[ "jlab-ide"]}]' cm-new.json > tmp && mv tmp cm-new.json

#Add rstudio images
jq '.frameworks[5] += {"name":"rstudio", "versions":[]}' cm-new.json > tmp && mv tmp cm-new.json
jq '.frameworks[5].versions += [{"name":"r4.0.0-rstudio1.3", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r4.0.0-rstudio1.3", "port":"8787", "ssl":"true", "caps":[ "r-ide"]},{"name":"r3.6.3-rstudio1.3", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r3.6.3-rstudio1.3", "port":"8787", "ssl":"true", "caps":[ "r-ide"]},{"name":"r3.6.3-rstudio1.2", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r3.6.3-rstudio1.2", "port":"8787", "ssl":"true", "caps":[ "r-ide"]},{"name":"r3.6.1-rstudio1.2", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r3.6.1-rstudio1.2", "port":"8787", "ssl":"true", "caps":[ "r-ide"]},{"name":"r3.5.3-rstudio1.2", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r3.5.3-rstudio1.2", "port":"8787", "ssl":"true", "caps":[ "r-ide"]},{"name":"r3.5.2-rstudio1.2", "image":"507987312224.dkr.ecr.us-west-2.amazonaws.com/rstudio:r3.5.2-rstudio1.2", "port":"8787", "ssl":"true", "caps":[ "r-ide"]}]' cm-new.json > tmp && mv tmp cm-new.json

kubectl create configmap dkube-platform-cfg --from-file=config\.json=cm-new.json -n dkube -o yaml --dry-run | kubectl apply -f -

if [ $? -ne 0 ]; then
printf "${RED}Failed to patch dkube-platform-cfg${NC}\n"
exit 1
fi

rm -f cm-new.json

generateCurlData=`cat <<EOF
{
"Kind":"inline",
"Inline":{
"Name":"global",
"Homedir":"fsx://${HOMEDIR}.fsx.us-west-2.amazonaws.com",
"options":[
{
"key":"volumeHandle",
"value":"${VOLUMEHANDLE}"
},
{
"key":"mountname",
"value":"${MOUNTNAME}"
}
],
"Limits":{
"Cpus":"1"
}
}
}
EOF
`

printf "${GREEN}\nCreating FSx user profile ...${NC}\n"
curl --insecure -XPOST -H "Authorization: Bearer ${TOKEN}" -H "Content-type: application/json" -d "${generateCurlData}" "${BASEDOMAIN}/dkube/v2/controller/userprofiles"

if [ $? -ne 0 ]; then
printf "${RED}Failed to create FSx user profile\n"
exit 1
fi

printf "${GREEN}\nApplying redshift configmap ...${NC}\n"
cat <<EOF | kubectl apply -f -
apiVersion: v1
data:
database_path: /sbx/datasets
endpoint: https://apollo-datamgmt-sbx.aws.science.roche.com
metadata_path: /sbx/metadata
token: 1NfVraHdkX5kfhw0OkbjJ2bOzNKav0pN8XwICg44
kind: ConfigMap
metadata:
name: redshift-access-info
namespace: dkube
EOF

if [ $? -ne 0 ]; then
printf "${RED}Failed to apply redshift configmap ${NC}\n"
exit 1
fi

printf "${GREEN}\nAll done!${NC}\n"