The error message says:
Error in .rowNamesDF<-(x, value = value) :
duplicate 'row.names' are not allowed
Calls: ... row.names<- -> row.names<-.data.frame -> .rowNamesDF<-
In addition: Warning message:
non-unique value when setting 'row.names': ‘entry withdrawn’
Execution halted
However, I have double checked the input dataframes. There are no duplicates concerning the HUGO gene symbols in the input data.
I also tried converting the HUGO symbols to ENSEMBL, removing duplicate entries again and back transforming it to HUGO symbols (see https://bioinformatics.stackexchange.com/questions/19584/error-of-duplicated-rownames-although-there-are-no-duplicates for explanation).
However, I still get the same error for many samples.
I have attached a tar.gz file with two dataframes as examples. One dataframe works (="df_working.Rda") while the other does not (="df_not_working.Rda) with quantiseq.
I would be glad if you could have a look at these files and check what is going wrong with them.
The error message says:
Error in .rowNamesDF<-(x, value = value) :
duplicate 'row.names' are not allowed
Calls: ... row.names<- -> row.names<-.data.frame -> .rowNamesDF<-
In addition: Warning message:
non-unique value when setting 'row.names': ‘entry withdrawn’
Execution halted
However, I have double checked the input dataframes. There are no duplicates concerning the HUGO gene symbols in the input data.
I also tried converting the HUGO symbols to ENSEMBL, removing duplicate entries again and back transforming it to HUGO symbols (see https://bioinformatics.stackexchange.com/questions/19584/error-of-duplicated-rownames-although-there-are-no-duplicates for explanation).
However, I still get the same error for many samples.
I have attached a tar.gz file with two dataframes as examples. One dataframe works (="df_working.Rda") while the other does not (="df_not_working.Rda) with quantiseq.
I would be glad if you could have a look at these files and check what is going wrong with them.