Discussions

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  ImmuneDeconv with spatial transcriptomic data

  SoniaHermoso asked Jul 4, 2025 in Q&A · Unanswered

  

  

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  Consider setting 'minSize' to a value > 1?

  gjones3339 asked Feb 22, 2025 in Q&A · Unanswered

  

  

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  Installation using pak::pkg_install("omnideconv/spacedeconv", dependencies=TRUE) not working

  joan-yanqiong asked Feb 3, 2025 in Q&A · Unanswered

  

  

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  How can i run seqImmuCC using a custom signature matrix for mouse deconvolution?

  LeonHornich asked Dec 13, 2024 in Q&A · Unanswered

  

  

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  DESeq2 normalized data or log2/vst normalized raw counts

  Aleksandra4496 asked Oct 22, 2024 in Q&A · Answered

  

  

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  Immunedeconv CIBERSORT p value and permutations

  bug Something isn't working

  dy001-lee asked Oct 21, 2024 in Q&A · Answered

  

  

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  log-transformation or not (two different statements)

  jacobHog asked Dec 4, 2023 in Q&A · Unanswered

  

  

  

  

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  installation issue with xCELL and MAC M1

  Kiliankleemann started Dec 15, 2023 in General

  

  

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  Deconvolute with own reference matrix

  FranziskaGoertler asked Apr 13, 2023 in Q&A · Unanswered

  

  

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  how to get immundeconv cibersort to match standalone cibersort

  RichardCorbett asked Mar 6, 2023 in Q&A · Unanswered

  

  

  

  

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  Negative scores with BASE and DCQ methods on deconvolute_mouse function?

  erzakiev started Feb 3, 2023 in General

  

  

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  how to obtain p-value, correlation and RMSE in CIBERSORT

  Pisto94 asked Jan 11, 2023 in Q&A · Answered

  

  

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  Error in deconvolute_cibersort

  huangwb8 asked Mar 22, 2021 in Q&A · Answered

  

  

  

  

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  Use of RMA normalised microarray data

  novino11 started Mar 11, 2022 in General

  

  

  

  

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  Error in deconvolution with cibersort

  ericrabbit asked Feb 6, 2022 in Q&A · Unanswered

  

  

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  Mouse?

  dining-philosopher asked Nov 3, 2021 in Q&A · Answered

  

  

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  No object found while running deconvolute

  andreselia asked Sep 1, 2021 in Q&A · Answered

  

  

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  Different results with EPIC and quanTIseq

  kpatel427 asked Aug 11, 2021 in Q&A · Unanswered

  

  

  

  

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  TPM verse TMM?

  srwis asked Apr 22, 2021 in Q&A · Answered

  

  

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  Help interpreting MCPcounter output

  masaver started Apr 20, 2021 in General

  

  

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  Can we merge two signature matrices: one from scRNA with the LM22?

  bharati-mehani asked Feb 22, 2021 in Q&A · Unanswered

  

  

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