feat: rebuildpy parity gate + Phase 1 loop module + schicluster-rs CLI - #2

Merged

Starlitnightly merged 20 commits into

omicverse:mainfrom

ChrisMao0325:main

Jun 3, 2026

Commits on Jun 3, 2026

docs: design spec for porting loop/domain/compartment/embedding to Rust

ChrisMao0325
and
claude
committed
0d782eb
docs: collapse to two-env parity flow; schicluster env runs TopDom directly

ChrisMao0325
and
claude
committed
51c3c3d
docs: implementation plan for Phase 0 (scaffold + shared 2-D convolution)

ChrisMao0325
and
claude
committed
d682003
docs: add rebuildpy artefact skeletons (DISCOVERY/MATH/ITERATION_LOG/AUDIT/RECONSTRUCTION_REPORT)

ChrisMao0325
and
claude
committed
883419e
gate: pre-register parity manifest (READ-ONLY)

ChrisMao0325
and
claude
committed
d51b648
fixtures: deterministic conv_small synthesiser (seeded f32)

ChrisMao0325
and
claude
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649228a
tests: manifest-driven parity gate + rebuildpy engine wiring

ChrisMao0325
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claude
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da17a52
tests: py_reference_driver — Phase 0 conv scaffold

ChrisMao0325
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claude
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a4e18ea
tests: _run_candidate — Phase 0 conv scaffold

ChrisMao0325
and
claude
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da38aae
tests: run_parity.sh — two-env orchestrator

ChrisMao0325
and
claude
committed
daa0ccf
refactor(rust): extract sparse/banded/dense helpers into utils.rs

ChrisMao0325
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claude
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70ba4e8
feat(rust): convolve2d_mirror — scipy.ndimage.convolve parity

ChrisMao0325
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claude
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f27664c
feat(py): public convolve2d_mirror wrapper

ChrisMao0325
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claude
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0a378c8
log: record Iteration 0 baseline for convolve2d_mirror

ChrisMao0325
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claude
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fb4cfc3
bump: 0.1.1 -> 0.2.0.dev0 (Phase 0 scaffold landed)

ChrisMao0325
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claude
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27373f4
feat: Phase 1 loop module ported to Rust (10 manifest outputs green)

ChrisMao0325
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claude
committed
489fddb
docs: README install+tutorial only, ship snakemake template, reorg artefacts

ChrisMao0325
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claude
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96c4518
feat: schicluster-rs CLI (filter-contact + prepare-impute subcommands)

ChrisMao0325
and
claude
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3757cd5
update README
ChrisMao0325
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79d2e7e
ci: switch maturin develop -> build + pip install; let manifest gate self-skip

ChrisMao0325
and
claude
committed
bd12701

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feat: rebuildpy parity gate + Phase 1 loop module + schicluster-rs CLI - #2

feat: rebuildpy parity gate + Phase 1 loop module + schicluster-rs CLI#2
Starlitnightly merged 20 commits into
omicverse:mainfrom
ChrisMao0325:main

Commits on Jun 3, 2026

docs: design spec for porting loop/domain/compartment/embedding to Rust

docs: collapse to two-env parity flow; schicluster env runs TopDom directly

docs: implementation plan for Phase 0 (scaffold + shared 2-D convolution)

docs: add rebuildpy artefact skeletons (DISCOVERY/MATH/ITERATION_LOG/AUDIT/RECONSTRUCTION_REPORT)

gate: pre-register parity manifest (READ-ONLY)

fixtures: deterministic conv_small synthesiser (seeded f32)

tests: manifest-driven parity gate + rebuildpy engine wiring

tests: py_reference_driver — Phase 0 conv scaffold

tests: _run_candidate — Phase 0 conv scaffold

tests: run_parity.sh — two-env orchestrator

refactor(rust): extract sparse/banded/dense helpers into utils.rs

feat(rust): convolve2d_mirror — scipy.ndimage.convolve parity

feat(py): public convolve2d_mirror wrapper

log: record Iteration 0 baseline for convolve2d_mirror

bump: 0.1.1 -> 0.2.0.dev0 (Phase 0 scaffold landed)

feat: Phase 1 loop module ported to Rust (10 manifest outputs green)

docs: README install+tutorial only, ship snakemake template, reorg artefacts

feat: schicluster-rs CLI (filter-contact + prepare-impute subcommands)

update README

ci: switch maturin develop -> build + pip install; let manifest gate self-skip