classify

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iborozan edited this page Sep 9, 2015 · 5 revisions

-tax {phylum,class,order,family,genus,species},--taxonRank {phylum,class,order,family,genus,species}

                Specify the taxon rank for classification (default = phylum)

-blast {blastn,megablast}, --use_blast {blastn,megablast}

                Use the blast similarity measure (default = blastn)

-c, --use_compression

                Use the compression similarity measure (default = False)

-nt NUMBER_THREADS, --number_threads NUMBER_THREADS

                Specify the number of threads to be used (default = 1)