ROMSslice modification#1

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simion1232006 wants to merge 83 commits into

ofringer:masterfrom

Commits on Jul 16, 2015

Restructured soda package
jadelson
committed

Commits on Oct 8, 2015

Major changes to make the module more python-like (added __init__.py)
mrayson
committed
Added cython-ized tools for handling unstructured grids
mrayson
committed

Commits on Oct 13, 2015

VERBOSE option in SUNPY. Added celldata plotting to Plot
mrayson
committed

Commits on Oct 21, 2015

Added a graph output function into the hybridgrid class
mrayson
committed

Commits on Oct 29, 2015

Commits on Nov 12, 2015

Minor fixes...
mrayson
committed

Commits on Dec 3, 2015

Included 'markcell' variable in hybridgrid class
mrayson
committed

Commits on Dec 9, 2015

Updated romsplotpy to ouput movies and slice at constant z
mrayson
committed

Commits on Jan 28, 2016

Many changes to various pre-processing tools
mrayson
committed

Commits on Feb 1, 2016

Seperated ModVsObs into its own module
mrayson
committed

Commits on Feb 4, 2016

Added suntans profile module. Tweaked bugs in boundary
mrayson
committed

Commits on Feb 8, 2016

Change to HybridGrid init
mrayson
committed

Commits on Feb 9, 2016

Fixed animation bug in sunplotpy.
mrayson
committed

Commits on Feb 18, 2016

Commits on Feb 26, 2016

Fixed bug in thredds download for multifile. Fixed polar plotting function.
mrayson
committed

Commits on Mar 3, 2016

Added gaussian filter smoothing function to depths. Added BRAN3.5 download tool
mrayson
committed

Commits on Mar 11, 2016

Fixed bug in SUNTANS profile conversion
mrayson
committed

Commits on Mar 14, 2016

Got mayavi to plot hybrid unstructured grids (2D surfaces only)
mrayson
committed

Commits on Mar 16, 2016

Cythonized some of the grid search functions
mrayson
committed

Commits on Mar 21, 2016

Updates to sunprofiles for dealing with nans
mrayson
committed

Commits on Mar 22, 2016

fixed bug in sunprofile with xray0.7.0
Matt Rayson
committed

Commits on Mar 30, 2016

Forced profiles to close their dataset after each use for memory
Matt Rayson
committed

Commits on Apr 7, 2016

Updated README.md. Updated bug in romsio
mrayson
committed

Commits on Apr 27, 2016

Minor bug fixes to various tools...
mrayson
committed

Commits on May 18, 2016

Inserted more metadata in netcdfio. Cleaned up sunslice
mrayson
committed

Commits on May 23, 2016

Changed suntans FillValue to -999999. Positive integer was causing problems in very large grids.
mrayson
committed

Commits on May 28, 2016

Fixed issue with parallel partitioning and 'markcell' variable
mrayson
committed

Commits on May 30, 2016

Commits on Jul 25, 2016

Modified contour2shp to work with tricontour objects
mrayson
committed

Commits on Aug 4, 2016

Fixed issues with the time variable in timeseries class. Added AVHRR dap download function
mrayson
committed

Commits on Aug 5, 2016

Fixed issue with datetime64 in tide fitting routines - uspectra
mrayson
committed

Commits on Aug 16, 2016

Small bug fix in suntans grid conversion to HybridGrid class
mrayson
committed

Commits on Aug 17, 2016

Added more low-frequency harmonics to tidal frequency list
mrayson
committed

Commits on Aug 26, 2016

replaced all '== None' statements in sunpy and sunslice. These were giving weird results
mrayson
committed
Modified setup.py tp work on windows-64

Matt Rayson
authored and
Matt Rayson
committed
Setup.py changed for windows-64

Matt Rayson
authored and
Matt Rayson
committed
Fixed FillValue backward compatibility bug in sunplotpy

Matt Rayson
authored and
Matt Rayson
committed

Commits on Sep 13, 2016

Commits on Sep 19, 2016

Modifications to timeseries, sunpy and netcdfio to handle (old) Galveston data
mrayson
committed

Commits on Oct 4, 2016

Minor change to timeseries 'get_tslice' method
mrayson
committed

Commits on Oct 5, 2016

Added bathymetry overlay to sunplotpy
mrayson
committed

Commits on Oct 10, 2016

Commits on Oct 11, 2016

Hack to mythredds to read in HYCOM on 2D mesh
Matt Rayson
committed

Commits on Oct 12, 2016

Use cmocean colormap in sunplotpy. Added div_H derived variable in sunpy
mrayson
committed

Commits on Oct 17, 2016

Update SUNTANS->ROMS boundary generator to include type-2
mrayson
committed

Commits on Oct 19, 2016

Fixed bug in roms2ic method
mrayson
committed

Commits on Oct 21, 2016

bug fix in timeseries to find the correct subset time
mrayson
committed

Commits on Nov 1, 2016

Modified contour2shp algorithm. Fixed ==None in uspectra
mrayson
committed

Commits on Nov 2, 2016

Added IMOS netcdf type into netcdfio
mrayson
committed

Commits on Nov 3, 2016

Correct a bug in the phase correction for the harmonic analysis
mrayson
committed

Commits on Nov 7, 2016

added an function to extract the OTPS phase and amplitude
mrayson
committed

Commits on Dec 14, 2016

Fixed some time issues in ModVsObs class
mrayson
committed

Commits on Dec 16, 2016

Commits on Dec 18, 2016

Fixed bug in phase offset calculation to harmonic fit
mrayson
committed

Commits on Dec 20, 2016

Commits on Dec 22, 2016

Fixed issue with othertime.SecondsSince and different time object-types
mrayson
committed

Commits on Jan 12, 2017

Small variation to time conversion scripts
mrayson
committed

Commits on Jan 18, 2017

Seperated harmonic analysis functions into their own file. Use harmonic_fit function in timeseries
mrayson
committed

Commits on Jan 19, 2017

Commits on Feb 1, 2017

Error checks in modvsobs object for different array sizes
mrayson
committed

Commits on Feb 7, 2017

Another attempt at fitting timeseries bugs w/ datetime64 objects
mrayson
committed

Commits on Feb 14, 2017

Commits on Feb 20, 2017

Made thredds parallel download options
mrayson
committed

Commits on Feb 24, 2017

Fixed issue with reference time for harmonic analysis routine
mrayson
committed

Commits on Feb 27, 2017

Fixed bug with 2d modvsobs objects (depth-variable)
mrayson
committed

Commits on Mar 16, 2017

Converted print statements and some spacing to work with Python 3.x and debugged imports in getNOAAWeatherStation.py
jadelson
committed

Commits on May 1, 2017

Superceded utm2ll (gdal) routines with pyproj class. Needs testing
mrayson
committed

Commits on May 2, 2017

Commits on Apr 6, 2019