Add rule to run haplocheck. https://mitoverse.readthedocs.io/haplocheck/haplocheck/ For contamination check / heteroplasmy. Is there disagreement between somatic and germline? Add warning flag.
Add rule to run haplocheck. https://mitoverse.readthedocs.io/haplocheck/haplocheck/
For contamination check / heteroplasmy.
Is there disagreement between somatic and germline? Add warning flag.