chore: adopt spec0, test on 3.14

.codespellrc

@@ -1,5 +1,5 @@
 [codespell]
-skip = .git,*.pdf,*.svg,*.html,dataset_description.json,*.bib
+skip = .git,.maint/*,*.pdf,*.svg,*.html,dataset_description.json,*.bib
 # te - TE
 # Weill - name
 # reson - Reson. abbreviation in citation

.github/workflows/test.yml

@@ -34,22 +34,22 @@ jobs:
     strategy:
       matrix:
         os: ['ubuntu-latest']
-        python-version: ['3.10', '3.11', '3.12', '3.13']
+        python-version: ['3.12', '3.13', '3.14']
         dependencies: ['latest', 'pre']
         include:
           - os: ubuntu-latest
-            python-version: '3.10'
+            python-version: '3.12'
             dependencies: 'min'
 
     env:
       DEPENDS: ${{ matrix.dependencies }}
 
     steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           submodules: recursive
           fetch-depth: 0
-      - uses: actions/cache@27d5ce7f107fe9357f9df03efb73ab90386fccae # v5.0.5
+      - uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
         with:
           path: ~/.cache/templateflow
           key: templateflow-v1
@@ -58,9 +58,9 @@ jobs:
           sudo apt update
           sudo apt install -y --no-install-recommends graphviz
       - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: ${{ matrix.python-version }}
       - name: Display Python version
@@ -75,30 +75,7 @@ jobs:
       - name: Minimize uv cache
         run: uv cache prune --ci
         if: ${{ always() }}
-      - uses: codecov/codecov-action@57e3a136b779b570ffcdbf80b3bdc90e7fab3de2 # v6.0.0
+      - uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
         if: ${{ always() }}
-
-  checks:
-    runs-on: "ubuntu-latest"
-    continue-on-error: true
-    strategy:
-      matrix:
-        check: ["style", "spellcheck"]
-
-    steps:
-      - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
-        with:
-          persist-credentials: false
-      - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
-      - name: Install tox
-        run: uv tool install tox --with=tox-uv
-      - name: Show tox config
-        run: tox c -e ${{ matrix.check }}
-      - name: Run check
-        run: tox -e ${{ matrix.check }}
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-        if: ${{ always() }}

.pre-commit-config.yaml

@@ -24,5 +24,9 @@ repos:
       - id: ruff-check
         args: [ --fix, --show-fixes ]
       - id: ruff-format
+  - repo: https://github.com/codespell-project/codespell
+    rev: 57b21406f092110c18776e39b0bda50d37c945c8  # frozen: v2.4.3
+    hooks:
+      - id: codespell
 ci:
   autoupdate_schedule: monthly

.readthedocs.yml

@@ -3,7 +3,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.11"
+    python: "3.12"
   apt_packages:
     - graphviz
   jobs:

fmriprep/cli/tests/test_version.py

@@ -22,7 +22,7 @@
 #
 """Test version checks."""
 
-from datetime import datetime, timezone
+from datetime import UTC, datetime
 from os import getenv, geteuid
 from pathlib import Path
 
@@ -72,7 +72,7 @@ def mock_get(*args, **kwargs):
     assert v == Version('1.1.0')
     assert cachefile.read_text().split('|') == [
         str(v),
-        datetime.now(tz=timezone.utc).strftime(DATE_FMT),
+        datetime.now(tz=UTC).strftime(DATE_FMT),
     ]
 
     # Second check - test the cache file is read
@@ -140,7 +140,7 @@ def mock_get(*args, **kwargs):
     [
         '3laj#r???d|3akajdf#',
         '2.0.0|3akajdf#',
-        '|'.join(('2.0.0', datetime.now(tz=timezone.utc).strftime(DATE_FMT), '')),
+        '|'.join(('2.0.0', datetime.now(tz=UTC).strftime(DATE_FMT), '')),
         '',
     ],
 )

fmriprep/cli/version.py

@@ -23,7 +23,7 @@
 """Version CLI helpers."""
 
 from contextlib import suppress
-from datetime import datetime, timezone
+from datetime import UTC, datetime
 from pathlib import Path
 
 import requests
@@ -41,7 +41,7 @@ def check_latest():
     latest = None
     date = None
     outdated = None
-    now = datetime.now(tz=timezone.utc)
+    now = datetime.now(tz=UTC)
     cachefile = Path.home() / '.cache' / 'fmriprep' / 'latest'
     try:
         cachefile.parent.mkdir(parents=True, exist_ok=True)
@@ -56,7 +56,7 @@ def check_latest():
         else:
             try:
                 latest = Version(latest)
-                date = datetime.strptime(date, DATE_FMT).astimezone(timezone.utc)
+                date = datetime.strptime(date, DATE_FMT).astimezone(UTC)
             except (InvalidVersion, ValueError):
                 latest = None
             else:

fmriprep/utils/asynctools.py

@@ -1,11 +1,8 @@
 import asyncio
 from collections.abc import Callable
-from typing import TypeVar
 
-R = TypeVar('R')
 
-
-async def worker(job: Callable[[], R], semaphore: asyncio.Semaphore) -> R:
+async def worker[R](job: Callable[[], R], semaphore: asyncio.Semaphore) -> R:
     async with semaphore:
         loop = asyncio.get_running_loop()
         return await loop.run_in_executor(None, job)

pyproject.toml

@@ -15,37 +15,36 @@ classifiers = [
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Image Recognition",
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
 ]
 license = "Apache-2.0"
 license-files = ["LICENSE"]
-requires-python = ">=3.10"
+requires-python = ">=3.12"
 dependencies = [
-    "acres >= 0.2.0",
+    "acres >= 0.5.0",
     "looseversion >= 1.3",
-    "nibabel >= 5.1.1",
+    "nibabel >= 5.3.0",
     "nipype >= 1.9.0",
-    "nireports >= 24.1.0",
-    "nitime >= 0.9",
+    "nireports >= 25.0.1",
+    "nitime >= 0.12",
     "nitransforms >= 25.0.1",
     "niworkflows >= 1.14.4",
-    "numpy >= 2.0",
-    "packaging >= 24",
-    "pandas >= 2.2",
-    "psutil >= 5.4",
-    "pybids >= 0.16",
-    "requests >= 2.27",
+    "numpy >= 2.1",
+    "packaging >= 24.2",
+    "pandas >= 2.2.3",
+    "psutil >= 6.1.0",
+    "pybids >= 0.21",
+    "requests >= 2.32.4",
     "sdcflows >= 2.15.0",
     "smriprep >= 0.19.2",
     "tedana >= 25.1.0",
     "templateflow >= 24.2.2",
     "transforms3d >= 0.4.2",
     "toml >= 0.10",
-    "codecarbon >= 2",
-    "APScheduler >= 3.10",
+    "codecarbon >= 2.7.0",
+    "APScheduler >= 3.11.0",
 ]
 dynamic = ["version"]
 
@@ -77,14 +76,14 @@ container = [
 ]
 telemetry = [
     "migas >= 0.4.0",
-    "sentry-sdk >= 1.3",
+    "sentry-sdk >= 2.13.0",
 ]
 test = [
-    "coverage[toml] >= 5.2.1",
-    "pytest >= 8.1",
-    "pytest-cov >= 2.11",
-    "pytest-env",
-    "pytest-xdist >= 2.5",
+    "coverage[toml] >= 7.6.2",
+    "pytest >= 8.3.3",
+    "pytest-cov >= 6.0.0",
+    "pytest-env >= 1.1.4",
+    "pytest-xdist >= 3.7.0",
 ]
 maint = [
     "fuzzywuzzy",

tox.ini

@@ -2,17 +2,16 @@
 requires =
   tox>=4
 envlist =
-  py3{10,11,12,13}-{latest,pre}
-  py310-min
+  py3{12,13,14}-{latest,pre}
+  py312-min
 skip_missing_interpreters = true
 
 # Configuration that allows us to split tests across GitHub runners effectively
 [gh-actions]
 python =
-  3.10: py310
-  3.11: py311
   3.12: py312
   3.13: py313
+  3.14: py314
 
 [gh-actions:env]
 DEPENDS =
@@ -49,39 +48,10 @@ uv_resolution =
 
 commands_pre =
   # Use py* to disable for other environments
-  py3{10,11,12,13}: python scripts/fetch_templates.py
+  py3{12,13,14}: python scripts/fetch_templates.py
 commands =
   pytest --cov-report term-missing --durations=20 --durations-min=1.0 {posargs:-n auto}
 
-[testenv:style]
-description = Check our style guide
-labels = check
-deps =
-  ruff
-skip_install = true
-commands =
-  ruff check --diff
-  ruff format --diff
-
-[testenv:style-fix]
-description = Auto-apply style guide to the extent possible
-labels = pre-release
-deps =
-  ruff
-skip_install = true
-commands =
-  ruff check --fix
-  ruff format
-
-[testenv:spellcheck]
-description = Check spelling
-labels = check
-deps =
-  codespell[toml]
-skip_install = true
-commands =
-  codespell . {posargs}
-
 [testenv:build{,-strict}]
 labels =
   check