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Pull requests: nf-core/raredisease

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Pull requests list

Use NGSbits SampleGender for ExpansionHunter sex
#1018 opened Sep 6, 2026 by SagharT Loading…
3 of 12 tasks
Remove hisat2
#1014 opened Sep 3, 2026 by ieduba Contributor Loading…
12 tasks
1
2
Specify allosomal contigs in PostprocessGermlineCNVCalls (GATK)
#966 opened Aug 6, 2026 by benstory Loading…
3 of 12 tasks
3
[dup] Add support for variant scoring by MIVMIR, GICAM models
#849 opened May 19, 2026 by torbjorgen Loading…
1
2
Feat/add optional filter params
#828 opened Apr 30, 2026 by krbe9202 Loading…
8 of 12 tasks
1
Add annotate_cadd subworkflow test
#794 opened Mar 24, 2026 by peterpru Member • Draft
12 tasks
@peterpru
2
Add Parabricks DeepVariant module
#724 opened Sep 19, 2025 by HudoGriz Loading…
3 of 12 tasks
3
Deepvariant subworkflow (issue #614)
#651 opened Dec 6, 2024 by fa2k Contributor • Draft
7 tasks done
9
ProTip! Updated in the last three days: updated:>2026-09-05.