Skip to content

Update mpox datasets to support newly designated clade Ib outbreak sh2023 lineages#461

Merged
corneliusroemer merged 8 commits into
masterfrom
mpox-ib-lineages
Jul 7, 2026
Merged

Update mpox datasets to support newly designated clade Ib outbreak sh2023 lineages#461
corneliusroemer merged 8 commits into
masterfrom
mpox-ib-lineages

Conversation

@corneliusroemer

@corneliusroemer corneliusroemer commented Jun 30, 2026

Copy link
Copy Markdown
Member

Preview: https://master.clades.nextstrain.org/?dataset-server=gh:@mpox-ib-lineages@

Description of proposed changes

Datasets now support sh2023 lineages designated in mpxv-lineages/lineage-designation#52

New clade-like field outbreakLineage added to unambiguously identify lineages across outbreaks.

Checklist

  • Check if changes affect downstream workflows which depend on this dataset. For instance, Nextstrain ingest workflows may break if clade nomenclature changes. Consider fixing those workflows or making an issue at least.

-> Changes will be necessary to downstream workflows, will work on them after release.

Copilot AI review requested due to automatic review settings June 30, 2026 16:47
@corneliusroemer corneliusroemer marked this pull request as draft June 30, 2026 16:47
Copilot stopped reviewing on behalf of corneliusroemer due to an error June 30, 2026 17:07

Copilot AI left a comment

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Copilot encountered an error and was unable to review this pull request. You can try again by re-requesting a review.

@corneliusroemer corneliusroemer temporarily deployed to refs/pull/461/merge July 6, 2026 13:36 — with GitHub Actions Inactive
@corneliusroemer corneliusroemer had a problem deploying to refs/heads/mpox-ib-lineages July 6, 2026 15:53 — with GitHub Actions Error
@corneliusroemer corneliusroemer deployed to refs/pull/461/merge July 6, 2026 15:54 — with GitHub Actions Active
@corneliusroemer corneliusroemer changed the title wip: Add mpox Ib lineages Update mpox datasets to support newly designated clade Ib outbreak sh2023 lineages Jul 7, 2026
@corneliusroemer corneliusroemer marked this pull request as ready for review July 7, 2026 13:55
@corneliusroemer corneliusroemer merged commit a15b2dd into master Jul 7, 2026
@corneliusroemer corneliusroemer deleted the mpox-ib-lineages branch July 7, 2026 13:55
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants