feat(phenotyping): spatially-aware graph_mi target + opt-in denoising, debias scoring, marker QC - #39

Merged

nceglia merged 5 commits into

mainfrom

feat/spatial-phenotype-classification

Jun 7, 2026

Commits on Jun 6, 2026

feat(phenotyping): spatially-aware graph_mi target + opt-in cell-vector denoising, debias scoring, and marker QC

nceglia
and
claude
committed
f2df11e
chore(workflow): warn when graph_mi runs on large panels (O(n_genes^2))

nceglia
and
claude
committed
e165d68
feat(phenotyping): expose all regime-dependent gainers as opt-in args

nceglia
and
claude
committed
9de260e
feat(targets): vectorized torch/GPU kernel for graph_mi & graph_cross_mi

nceglia
and
claude
committed
80adb07
feat(targets): rayon Rust kernel for graph_mi (fastest CPU path)

nceglia
and
claude
committed
ddd62a5