Retreats Spring2014 Topics

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Stephan Aiche edited this page Mar 24, 2014 · 6 revisions

Discussions

OpenMS 2.0 - Features & Requirements
C++11 - Adaption (not with pyOpenMS)
Replace Logging with Boost.Log
Inheritance vs. composition
Interfaces instead of templates
Implementation of mzQuantML/mzIdentML/mzTab
Modularization of OpenMS
Generic Galaxy Nodes
Protein inference
Spectral matching
Protein Evidence Traceback

Hacking

Qt5 support
Removal of DB Support??
Rewrite of ProgressLogger
TOPP tool / classses for protein inference (see discussion)
KNIME Testing
Design and implement a new concept of Residues, Modifications, AASequence and theoretical spectra generation
Small molecules adaption of OpenMS
Update of the online documentation
Cleanup of SVN traces
Fix/discuss warnings in OpenMS

Scheduled discussions

Breakout Session Git Q&A [Christian, Hannes, Stephan] - Now
Maintenance and compatibility [Hannes, Stephan] - Tuesday Morning session
OpenMS Interfaces and modularisation [Hannes] - Wednesday Morning session