star_protocols_wes3x

Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
01-resources.sh		01-resources.sh
02-software.sh		02-software.sh
03-data.sh		03-data.sh
04-fastqc.sh		04-fastqc.sh
05-trimgalore.sh		05-trimgalore.sh
06-refindex.sh		06-refindex.sh
07-alignment.sh		07-alignment.sh
08-preparebam.sh		08-preparebam.sh
09-bamstats.sh		09-bamstats.sh
10-signal.sh		10-signal.sh
11-bqsr.sh		11-bqsr.sh
12-gatk.sh		12-gatk.sh
13-freebayes.sh		13-freebayes.sh
14-deepvariant.sh		14-deepvariant.sh
15-annotation.sh		15-annotation.sh
16-consolidation.sh		16-consolidation.sh
LICENSE		LICENSE
README.md		README.md

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