Hi, I'm having an issue where if I pass more than one module to the CoexpressionModulePlot function, I get an html file returned with an unpredictable number of modules depicted as networks. This occurs both if I pass the modules as below through wgcnafull.datExpr.var.moduleColors.unique().tolist() or if I list specific ones individually (e.g. ['salmon', 'silver', 'lightcoral', 'whitesmoke', 'navajowhite','chocolate', 'black']). The program doesn't throw any errors during this process. I could be misunderstanding how these are supposed to be represented. I imagine splicing individual files together could suffice as a workaround. Thanks!
modules = wgcnafull.datExpr.var.moduleColors.unique().tolist() wgcnafull.CoexpressionModulePlot(modules=modules, numGenes=500, numConnections=1000, minTOM=0, file_name="all")
all.html
Hi, I'm having an issue where if I pass more than one module to the CoexpressionModulePlot function, I get an html file returned with an unpredictable number of modules depicted as networks. This occurs both if I pass the modules as below through
wgcnafull.datExpr.var.moduleColors.unique().tolist()or if I list specific ones individually (e.g.['salmon', 'silver', 'lightcoral', 'whitesmoke', 'navajowhite','chocolate', 'black']). The program doesn't throw any errors during this process. I could be misunderstanding how these are supposed to be represented. I imagine splicing individual files together could suffice as a workaround. Thanks!modules = wgcnafull.datExpr.var.moduleColors.unique().tolist() wgcnafull.CoexpressionModulePlot(modules=modules, numGenes=500, numConnections=1000, minTOM=0, file_name="all")all.html