DRAFT: Test/simplify transformation tests - #749

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raivo-otus wants to merge 15 commits into

microbiome:develfrom

raivo-otus:test/simplify-transformation-tests

Commits on Jul 10, 2025

Test transformAssay(method = clr) against vegan::decostand
raivo-otus
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4d9fc84
Remove reduntant expect_error()
raivo-otus
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264225b
Remove unnecessary lines
raivo-otus
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5d7c0fc
Simplify Hellinger transformation test
raivo-otus
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28ca441
Add test for rCLR transformation
raivo-otus
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ec52a75
Add missing test for rCLR equivalence when zero added to samples
raivo-otus
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236dc61
Remove some unnecessary calculations, test only against vegan
raivo-otus
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9d5a422
Remove redundant rank calculation, and add rank test for vegan equivalence
raivo-otus
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87c0916

Commits on Dec 16, 2025

Merge branch 'devel' into test/simplify-transformation-tests
raivo-otus
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25b1375
relabundance vs decostand
raivo-otus
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7304601
pa vs decostand
raivo-otus
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e245869
remove redundant test
raivo-otus
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d46cd49
refactor to appropriate section
raivo-otus
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49ed631
standardize vs decostand
raivo-otus
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b90e71a

Commits on Mar 9, 2026

Merge branch 'devel' into test/simplify-transformation-tests
0xMuluh
authored
7bda606