mirgff3_shiny

a Rshiny tool to visualize mirgff3 files

dependencies

pkgs <- c(
    "shinythemes",
    "DESeq2",
    "tidyverse",
    "stringr",
    "SummarizedExperiment",
    "purrrlyr",
    "ggplot2",
    "DEGreport",
    "shiny",
    "DT")
    
install.packages("BiocManager)
BiocManager::install(pkgs_to_install, update=FALSE, ask=FALSE)

Quick start

• Download app
• Extract file
• Open Rproj file

library(shinythemes)
runApp()

Use the files in test to use the app with a dummy data.

Optional data

For a test with heavier data files download the compressed files from:

https://www.dropbox.com/s/addg7wldhl1k46s/geu-mirtop.gff.gz?dl=0

https://www.dropbox.com/s/9xx5d9u1veq6oa3/geu-metadata.csv?dl=0