multiple locations found

[olasabet]

I installed the BaSiC plugin as outlined and have used it before on Fiji. Recently I tried to use it again and it hit the following incompatibility. I don't know where to start from in troubleshooting.

[Sun Oct 03 17:30:57 CEST 2021] [ERROR] [] null
java.lang.NoSuchMethodException: Could not find method edu.emory.mathcs.utils.ConcurrencyUtils.getThreadsBeginN_1D()I
There was a problem with the class edu.emory.mathcs.utils.ConcurrencyUtils which can be found here:
/Users/work/Applications/Fiji.app/jars/jtransforms-2.4.jar
/Users/work/Applications/Fiji.app/jars/parallelcolt-0.9.4.jar

WARNING: multiple locations found!
java.lang.NoSuchMethodError: edu.emory.mathcs.utils.ConcurrencyUtils.getThreadsBeginN_1D()I
at cern.colt.matrix.tdouble.impl.DenseDoubleMatrix1D.zSum(Unknown Source)
at BaSiC_.matrixMean(BaSiC_.java:1041)
at BaSiC_.ShadingCorrection(BaSiC_.java:540)
at BaSiC_.exec(BaSiC_.java:403)
at BaSiC_.processDialog(BaSiC_.java:259)
at BaSiC_.showDialog(BaSiC_.java:164)
at BaSiC_.run(BaSiC_.java:113)
at ij.IJ.runUserPlugIn(IJ.java:241)
at ij.IJ.runPlugIn(IJ.java:204)
at ij.Executer.runCommand(Executer.java:150)
at ij.Executer.run(Executer.java:68)
at java.lang.Thread.run(Thread.java:748)

at cern.colt.matrix.tdouble.impl.DenseDoubleMatrix1D.zSum(Unknown Source)
at BaSiC_.matrixMean(BaSiC_.java:1041)
at BaSiC_.ShadingCorrection(BaSiC_.java:540)
at BaSiC_.exec(BaSiC_.java:403)
at BaSiC_.processDialog(BaSiC_.java:259)
at BaSiC_.showDialog(BaSiC_.java:164)
at BaSiC_.run(BaSiC_.java:113)
at ij.IJ.runUserPlugIn(IJ.java:241)
at ij.IJ.runPlugIn(IJ.java:204)
at ij.Executer.runCommand(Executer.java:150)
at ij.Executer.run(Executer.java:68)
at java.lang.Thread.run(Thread.java:748)

[olasabet]

Fixed thanks!

[AntonioMargheriti]

Hello olasabet

I currently have the same error message as you did. I've already tried the troubleshooting approach described on the BaSiC website - I did not have a jtransforms2.4.jar file so I don't think that any issue can stem from there. Could you tell me how you fixed this issue?

Cheers

[olasabet]

Hi Antonio,
yes go to your jars folder (for example for me /Users/work/Applications/Fiji.app/jars/) then look for the files that start with jtransforms and parallelcolt. You will find two of them (hence the error), delete the duplicate or take it out of the jars folder somewhere else until you are sure things are running. Cheers

[AntonioMargheriti]

Hi olasabet

I see, thanks a lot - it's working now.

Cheers