crisprML

Library design for CRISPr screen. Based on code provided by Alex Perez.

Order of scripts

1. gRNA_from_annotations.py
2. specificity_score_distance_neighbors.py
3. extract_screening_gRNAs.py
4. gRNA_data_gene_check.py

Automating the applicatin by bash scripts

1. gRNA_from_annotations.sh -- runs gRNA_from_annotations.py
2. feature_generation_from_sequence.sh -- runs specificity_score_distance_neighbors.py