Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration
Smeds, L., Huson, L.S.A. & Ellegren, H. (2024). Evolutionary applications 17, e13652. https://doi.org/10.1111/eva.13652
All code is written by Linnéa Smeds and Lars S.A. Huson, except the scripts gen_samplot_*.py that were generously provided by Gabriel David (David et al. (2024). Genome Biology and Evolution, 16(4) evae049, https://doi.org/10.1093/gbe/evae049).
All parts of the project are described in the script main_commands.sh.
R scripts for creating the figures in the paper are found in the subdirectory R/.
The raw structural variant ouput from Smoove, as well as final filtered and curated genotype data and sample metadata are found in Dryad: 10.5061/dryad.12jm63z57.