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chore(deps): lock file maintenance#98
renovate[bot] wants to merge 2 commits into
mainfrom
renovate/lock-file-maintenance

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@renovate

@renovate renovate Bot commented Mar 30, 2026 •
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This PR contains the following updates:

Update Change
lockFileMaintenance All locks refreshed

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Some dependencies could not be looked up. Check the Dependency Dashboard for more information.

🔧 This Pull Request updates lock files to use the latest dependency versions.

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📅 Schedule: (UTC)

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🚦 Automerge: Enabled.

♻ Rebasing: Whenever PR is behind base branch, or you tick the rebase/retry checkbox.

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This PR was generated by Mend Renovate. View the repository job log.

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@renovate renovate Bot requested a review from liblaf March 30, 2026 04:45
@renovate renovate Bot force-pushed the renovate/lock-file-maintenance branch from b8e04d5 to 6571406 Compare May 23, 2026 07:12
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@liblaf-mega-linter

liblaf-mega-linter Bot commented May 23, 2026 •
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✅⚠️MegaLinter analysis: Success with warnings

Descriptor Linter Files Fixed Errors Warnings Elapsed time
✅ BASH shellcheck 2 0 0 0.4s
✅ BASH shfmt 2 0 0 0 1.02s
⚠️ COPYPASTE jscpd yes 561 no 13.18s
✅ JSON prettier 41 28 0 0 3.93s
✅ JSON v8r 41 0 0 7.67s
✅ MARKDOWN rumdl 59 0 0 0 1.26s
⚠️ PYTHON ruff yes yes 64 no 1.99s
✅ PYTHON ruff-format yes yes no no 0.33s
✅ REPOSITORY git_diff yes no no 1.34s
⚠️ SPELL cspell 339 60 0 10.09s

Detailed Issues

⚠️ SPELL / cspell - 60 errors 
exp/2026/05/13/toy/data/30-inverse-activation-diff-forward-no-collision-summary.json:13:4      - Unknown word (bbox)       -- "bbox_diagonal": 1.732050
	 Suggestions: [box, mbox, vbox, xbox, Xbox]
exp/2026/05/13/toy/data/40-inverse-activation-diff-forward-collision-summary.json:17:12     - Unknown word (atol)       -- "forward_atol": 0.001,
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/13/toy/data/40-inverse-activation-diff-forward-collision-summary.json:19:4      - Unknown word (bbox)       -- "bbox_diagonal": 2.872281
	 Suggestions: [box, mbox, vbox, xbox, Xbox]
exp/2026/05/13/toy/data/41-inverse-active-tet-activation-diff-forward-collision-summary.json:23:12     - Unknown word (atol)       -- "forward_atol": 0.001,
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/13/toy/data/41-inverse-active-tet-activation-diff-forward-collision-summary.json:29:4      - Unknown word (bbox)       -- "bbox_diagonal": 2.872281
	 Suggestions: [box, mbox, vbox, xbox, Xbox]
exp/2026/05/13/toy/src/20-smas-layer-bottom-force-collision.py:151:22    - Unknown word (Efat)       -- mesh.field_data["Efat"] = np.asarray([cfg
	 Suggestions: [Efta, Feat, Erat, Eat, Eft]
exp/2026/05/13/toy/src/20-smas-layer-bottom-force-collision.py:152:22    - Unknown word (Esmas)      -- mesh.field_data["Esmas"] = np.asarray([cfg
	 Suggestions: [Smas, Seams, Seas, edams, Edams]
exp/2026/05/20/inverse-face/docs/20-inverse-face.md:42:38     - Unknown word (atol)       -- tolerance: `rtol=0.0005`, `atol=0`
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/20/inverse-face/docs/20-inverse-face.md:43:38     - Unknown word (atol)       -- tolerance: `rtol=0.0005`, `atol=0`
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/20/inverse-face/docs/30-inverse-face-3152k.md:47:41     - Unknown word (atol)       -- PNCG, `rtol = 5e-4`, `atol = 0`, `max_steps =
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/20/inverse-face/docs/30-inverse-face-3152k.md:48:60     - Unknown word (atol)       -- fallback, `rtol = 5e-4`, `atol = 0`,
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/20/inverse-face/docs/30-transfer-activation-3152k.md:75:11     - Unknown word (atol)       -- forward_atol: 0.0
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/20/inverse-face/docs/31-transfer-activation-3152k-smas1.md:72:11     - Unknown word (atol)       -- forward_atol: 0.0
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/forward-face/docs/10-forward-face-3152k.md:79:142    - Unknown word (atol)       -- defaults: `rtol = 5e-4`, `atol = 0`, `max_steps =
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/forward-face/docs/20-forward-face-515k-nosmas.md:85:98     - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, `max_steps =
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/forward-face/docs/30-inverse-face-515k-nosmas.md:36:223    - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, `max_steps =
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/forward-face/src/20-forward-face.py:393:9     - Unknown word (cmap)       -- cmap="viridis",
	 Suggestions: [camp, mcap, chap, clap, crap]
exp/2026/05/27/forward-face/src/20-forward-face.py:393:15    - Unknown word (viridis)    -- cmap="viridis",
	 Suggestions: [virid, veridic, virions, viridian, viridity]
exp/2026/05/27/forward-face/src/20-forward-face.py:404:9     - Unknown word (cmap)       -- cmap="viridis",
	 Suggestions: [camp, mcap, chap, clap, crap]
exp/2026/05/27/forward-face/src/20-forward-face.py:404:15    - Unknown word (viridis)    -- cmap="viridis",
	 Suggestions: [virid, veridic, virions, viridian, viridity]
exp/2026/05/27/inverse-face/docs/10-inverse-face-3152k-expression001.md:31:82     - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, and `max_steps
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-inverse-face-3152k-expression001.md:69:145    - Unknown word (atol)       -- baseline because `forward_atol = 0`. The successful
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-worklog.md:12:218    - Unknown word (atol)       -- with `rtol = 5e-4`, `atol = 0`, and `max_steps
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/05/27/inverse-face/docs/10-worklog.md:60:155    - Unknown word (atol)       -- equilibrium and `forward_atol = 0`, the first relative
	 Suggestions: [atob, atom, aton, atop, awol]
exp/2026/06/10/surface-prestrain/data/10-surface-prestrain-forward-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/20-surface-prestrain-expression000-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/21-surface-prestrain-expression000-prestrain04-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/22-surface-metric-penalty-expression000-prestrain10-table.md:1:36      - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:20:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:22:18     - Unknown word (isface)     -- "surface/n_isface_triangles": 13079,
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:54:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:56:18     - Unknown word (isface)     -- "surface/n_isface_triangles": 13079,
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-summary.json:88:142    - Unknown word (isface)     -- expression000-smas1-isface.vtp",
	 Suggestions: [iface, isaac, issac, infare, isaacs]
exp/2026/06/10/surface-prestrain/data/30-volume-area-change-diagnostics-table.md:1:32      - Unknown word (tris)       -- label | tets | IsFace tris | volume rel RMS | volume
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/10-surface-prestrain-forward.md:18:165    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,515k,3152k,direct-forward
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/10-surface-prestrain-forward.md:73:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:17:169    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:21:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/20-surface-prestrain-expression000.md:72:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:16:169    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:20:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/21-surface-prestrain-expression000-prestrain04.md:68:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:17:178    - Unknown word (isface)     -- TAGS='surface-prestrain,isface,Expression000,515k,
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:21:71     - Unknown word (noclamp)    -- face-fresh-nu049-smas1-noclamp-super-loose-reg.vtu
	 Suggestions: [onramp, nodemap, on-ramp, ncap, nola]
exp/2026/06/10/surface-prestrain/docs/22-surface-metric-penalty-expression000-prestrain10.md:72:36     - Unknown word (tris)       -- IsFace points | prestrain tris | previous RMS | prestrain
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:16:208    - Unknown word (isface)     -- volume-change,area-change,isface,515k,3152k,diagnostics
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:45:54     - Unknown word (isface)     -- expression000-smas1-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:46:57     - Unknown word (isface)     -- expression000-smas100-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:47:54     - Unknown word (isface)     -- expression000-smas1-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/docs/30-volume-area-change-diagnostics.md:48:57     - Unknown word (isface)     -- expression000-smas100-isface.vtp`
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:152:5     - Unknown word (isface)     -- def isface_triangles(
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:175:5     - Unknown word (isface)     -- isface = pv.PolyData(mesh.points
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:176:5     - Unknown word (isface)     -- isface.point_data["vtkOriginalPointI
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:177:5     - Unknown word (isface)     -- isface.point_data[mask_name
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:178:23    - Unknown word (isface)     -- return triangles, isface
	 Suggestions: [iface, isaac, issac, infare, isback]
exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:342:41    - Unknown word (tris)       -- label | tets | IsFace tris | volume rel RMS | volume
	 Suggestions: [tais, this, tres, très, trie]
exp/2026/06/10/unreachable-inverse-physics/docs/10-real-mesh-area-volume.md:20:73     - Unknown word (isface)     -- mesh,diagnostic-vtu,isface,clean" \
	 Suggestions: [isaac, issac, infare, isaacs, Isaac]
exp/2026/06/10/unreachable-inverse-physics/docs/10-real-mesh-area-volume.md:74:376    - Unknown word (unreachability) -- support a global volume-unreachability explanation for it.
	 Suggestions: [unreadability, reachability, unreliability]
src/liblaf/apple/inverse/_diff_forward.py:92:9      - Unknown word (rprecondition) -- def rprecondition(self, p_free: Free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
src/liblaf/apple/inverse/_diff_forward.py:99:21     - Unknown word (rprecondition) -- return self.rprecondition(p_free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
CSpell: Files checked: 320, skipped: 19, Issues found: 60 in 28 files.


You can skip this misspellings by defining the following .cspell.json file at the root of your repository
Of course, please correct real typos before :)

{
    "version": "0.2",
    "language": "en",
    "ignorePaths": [
        "**/node_modules/**",
        "**/vscode-extension/**",
        "**/.git/**",
        "**/.pnpm-lock.json",
        ".vscode",
        "package-lock.json",
        "megalinter-reports"
    ],
    "words": [
        "Efat",
        "Esmas",
        "atol",
        "bbox",
        "cmap",
        "isface",
        "noclamp",
        "rprecondition",
        "tris",
        "unreachability",
        "viridis"
    ]
}


You can also copy-paste megalinter-reports/LINTER_DEFAULT at the root of your repository
⚠️ COPYPASTE / jscpd - 561 errors 
inverse-segement/src/30-inverse.py [138:39 - 242:24]

Clone found (python):
 - exp/2025/08/27/inverse/src/20-forward.py [1:1 - 29:42] (28 lines, 244 tokens)
   exp/2025/08/27/inverse-segement/src/20-forward.py [1:1 - 29:43]

Clone found (python):
 - exp/2025/08/27/inverse/src/20-forward.py [33:40 - 51:24] (18 lines, 191 tokens)
   exp/2025/08/27/inverse-segement/src/20-forward.py [33:30 - 51:24]

Clone found (python):
 - exp/2025/08/27/inverse/src/10-gen.py [32:5 - 39:24] (7 lines, 85 tokens)
   exp/2025/08/27/inverse-segement/src/10-gen.py [46:5 - 53:24]

Clone found (python):
 - exp/2025/07/30/phace/wind/main.py [126:5 - 136:14] (10 lines, 144 tokens)
   exp/2025/07/30/dynamics/collision/inter-collision/main.py [132:84 - 142:15]

Clone found (python):
 - exp/2025/07/30/phace/wind/main.py [139:9 - 152:46] (13 lines, 156 tokens)
   exp/2025/07/30/dynamics/collision/inter-collision/main.py [142:9 - 155:46]

Clone found (python):
 - exp/2025/07/30/phace/open-mouth/main.py [9:1 - 19:13] (10 lines, 102 tokens)
   exp/2025/07/30/phace/wind/main.py [8:1 - 18:12]

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 - exp/2025/07/30/phace/open-mouth/main.py [24:5 - 36:14] (12 lines, 94 tokens)
   exp/2025/07/30/dynamics/collision/collision-bunny-bunny/main.py [19:5 - 31:9]

Clone found (python):
 - exp/2025/07/30/phace/open-mouth/main.py [25:21 - 55:12] (30 lines, 315 tokens)
   exp/2025/07/30/phace/wind/main.py [30:19 - 60:15]

Clone found (python):
 - exp/2025/07/30/phace/open-mouth/main.py [95:85 - 105:33] (10 lines, 148 tokens)
   exp/2025/07/30/dynamics/collision/inter-collision/main.py [132:84 - 136:38]

Clone found (python):
 - exp/2025/07/30/phace/open-mouth/main.py [105:88 - 119:25] (14 lines, 153 tokens)
   exp/2025/07/30/phace/wind/main.py [138:9 - 155:23]

Clone found (python):
 - exp/2025/07/30/phace/grin/main.py [1:1 - 12:59] (11 lines, 103 tokens)
   exp/2025/07/30/phace/wind/main.py [1:1 - 12:60]

Clone found (python):
 - exp/2025/07/30/phace/grin/main.py [19:5 - 36:12] (17 lines, 142 tokens)
   exp/2025/07/30/phace/open-mouth/main.py [20:5 - 42:12]

Clone found (python):
 - exp/2025/07/30/phace/grin/main.py [101:5 - 107:45] (6 lines, 74 tokens)
   exp/2025/07/30/dynamics/collision/inter-collision/main.py [132:84 - 138:36]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [1:1 - 14:29] (13 lines, 106 tokens)
   exp/2025/07/30/phace/wind/main.py [1:1 - 15:6]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [35:5 - 53:37] (18 lines, 164 tokens)
   exp/2025/07/30/phace/wind/main.py [32:5 - 44:44]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [53:37 - 66:12] (13 lines, 146 tokens)
   exp/2025/07/30/phace/grin/main.py [44:44 - 56:11]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [90:54 - 97:67] (7 lines, 77 tokens)
   exp/2025/07/30/phace/grin/main.py [90:27 - 97:67]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [107:5 - 117:13] (10 lines, 142 tokens)
   exp/2025/07/30/dynamics/collision/inter-collision/main.py [132:84 - 111:26]

Clone found (python):
 - exp/2025/07/30/phace/dynamics/main.py [118:81 - 126:43] (8 lines, 101 tokens)
   exp/2025/07/30/phace/grin/main.py [112:77 - 120:41]

Clone found (python):
 - exp/2025/07/30/phace/collide-ball/main.py [9:1 - 18:26] (9 lines, 95 tokens)
   exp/2025/07/30/phace/wind/main.py [9:1 - 19:26]

Clone found (python):
 - exp/2025/07/30/phace/collide-ball/main.py [12:60 - 35:40] (23 lines, 195 tokens)
   exp/2025/07/30/phace/grin/main.py [12:52 - 36:47]

Clone found (python):
 - exp/2025/07/30/phace/collide-ball/main.py [35:40 - 42:66] (7 lines, 122 tokens)
   exp/2025/07/30/phace/wind/main.py [41:47 - 48:64]

Clone found (python):
 - exp/2025/07/30/phace/close-mouth/main.py [1:1 - 22:12] (21 lines, 180 tokens)
   exp/2025/07/30/phace/open-mouth/main.py [1:1 - 21:10]

Clone found (python):
 - exp/2025/07/30/phace/close-mouth/main.py [29:5 - 57:12] (28 lines, 311 tokens)
   exp/2025/07/30/phace/wind/main.py [32:5 - 60:15]

Clone found (python):
 - exp/2025/07/30/phace/close-mouth/main.py [101:5 - 140:21] (39 lines, 450 tokens)
   exp/2025/07/30/phace/open-mouth/main.py [55:5 - 124:9]

Clone found (python):
 - exp/2025/07/30/phace/close-mouth/main.py [140:47 - 165:46] (25 lines, 356 tokens)
   exp/2025/07/30/phace/open-mouth/main.py [94:46 - 155:46]

Clone found (python):
 - exp/2025/07/30/dynamics/free-falling/main.py [25:21 - 58:8] (33 lines, 358 tokens)
   exp/2025/07/30/dynamics/collision/collision-bunny/main.py [24:19 - 57:11]

Clone found (python):
 - exp/2025/07/30/dynamics/free-falling/main.py [78:5 - 84:11] (6 lines, 86 tokens)
   exp/2025/07/30/dynamics/collision/collision-bunny/main.py [75:5 - 81:11]

Clone found (python):
 - exp/2025/07/30/dynamics/free-falling/main.py [137:5 - 151:14] (14 lines, 138 tokens)
   exp/2025/07/30/dynamics/collision/collision-bunny-sphere/main.py [69:5 - 83:14]

Clone found (python):
 - exp/2025/04/30/fat-muscle/src/20-simulate.py [17:5 - 30:35] (13 lines, 138 tokens)
   exp/2025/04/30/human-head/src/10-simulate.py [18:5 - 31:37]

Clone found (python):
 - exp/2025/04/30/fat-muscle/src/20-simulate.py [48:43 - 58:61] (10 lines, 136 tokens)
   exp/2025/04/30/human-head/src/10-simulate.py [47:56 - 57:63]

Clone found (python):
 - exp/2025/04/30/fat-muscle/src/20-simulate.py [59:60 - 72:3] (13 lines, 107 tokens)
   exp/2025/04/30/human-head/src/10-simulate.py [58:62 - 71:4]

Clone found (python):
 - exp/2025/04/30/cubic/src/10-gen.py [21:54 - 44:35] (23 lines, 196 tokens)
   exp/2025/04/30/human-head/src/10-simulate.py [24:76 - 46:40]

Clone found (python):
 - exp/2025/04/30/cubic/src/10-gen.py [44:66 - 71:24] (27 lines, 303 tokens)
   exp/2025/04/30/fat-muscle/src/20-simulate.py [46:74 - 73:24]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:1 - 63:31] (6 lines, 83 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:67 - 42:13]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [81:46 - 93:11] (12 lines, 171 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:35 - 69:48]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [102:36 - 108:6] (6 lines, 82 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [21:28 - 26:7]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [103:14 - 116:12] (13 lines, 166 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:11 - 94:12]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [25:18 - 35:7] (10 lines, 126 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [27:18 - 37:10]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [74:78 - 84:12] (10 lines, 127 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [53:1 - 63:48]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [93:14 - 103:12] (10 lines, 121 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [53:11 - 63:48]

Clone found (python):
 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [116:43 - 150:6] (34 lines, 323 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [135:10 - 169:6]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [1:1 - 28:18] (27 lines, 251 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [1:1 - 28:17]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [29:51 - 39:17] (10 lines, 105 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [29:58 - 39:17]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [39:44 - 60:17] (21 lines, 193 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [39:47 - 60:17]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [62:63 - 84:12] (22 lines, 280 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [62:22 - 63:48]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [83:63 - 103:12] (20 lines, 280 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [83:22 - 63:48]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [102:63 - 110:17] (8 lines, 92 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [102:22 - 110:23]

Clone found (python):
 - src/liblaf/apple/warp/fem/_neo_hookean.py [110:17 - 150:6] (40 lines, 380 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [110:23 - 169:6]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [189:37 - 196:14] (7 lines, 90 tokens)
   src/liblaf/apple/warp/fem/_base.py [166:40 - 173:19]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [211:31 - 218:16] (7 lines, 92 tokens)
   src/liblaf/apple/warp/fem/_base.py [166:31 - 173:19]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [235:36 - 243:22] (8 lines, 108 tokens)
   src/liblaf/apple/warp/fem/_base.py [166:40 - 197:19]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [266:9 - 272:19] (6 lines, 86 tokens)
   src/liblaf/apple/warp/fem/_base.py [167:9 - 173:19]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [292:14 - 300:19] (8 lines, 102 tokens)
   src/liblaf/apple/warp/fem/_base.py [262:14 - 270:22]

Clone found (python):
 - src/liblaf/apple/warp/fem/_base.py [327:9 - 334:19] (7 lines, 103 tokens)
   src/liblaf/apple/warp/fem/_base.py [296:9 - 303:19]

Clone found (python):
 - src/liblaf/apple/warp/fem/_arap.py [7:33 - 22:7] (15 lines, 106 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [7:41 - 22:7]

Clone found (python):
 - src/liblaf/apple/warp/fem/_arap.py [89:53 - 121:6] (32 lines, 288 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [137:55 - 169:6]

Clone found (python):
 - exp/2025/07/30/static/stretch.py [12:5 - 19:52] (7 lines, 105 tokens)
   exp/2025/07/30/static/random/main.py [19:5 - 25:53]

Clone found (python):
 - exp/2025/07/30/static/stretch.py [28:9 - 39:30] (11 lines, 124 tokens)
   exp/2025/07/30/static/random/main.py [40:9 - 51:35]

Clone found (python):
 - exp/2025/07/30/static/stretch.py [49:1 - 54:10] (5 lines, 83 tokens)
   exp/2025/07/30/static/random/main.py [60:44 - 65:10]

Clone found (python):
 - exp/2025/07/30/static/stretch.py [67:5 - 77:14] (10 lines, 115 tokens)
   exp/2025/07/30/static/random/main.py [73:5 - 83:10]

Clone found (python):
 - tests/forward/test_static_simulation.py [77:31 - 85:11] (8 lines, 80 tokens)
   exp/2026/05/06/toy/src/10-stretched-cylinder.py [84:43 - 92:17]

Clone found (python):
 - benches/test_aggregation.py [115:9 - 129:11] (14 lines, 161 tokens)
   benches/test_aggregation.py [68:88 - 80:92]

Clone found (python):
 - benches/bench_pncg_branching_backends.py [180:20 - 192:8] (12 lines, 87 tokens)
   benches/bench_pncg_branching_backends.py [141:14 - 153:9]

Clone found (python):
 - benches/bench_pncg_branching_backends.py [347:9 - 357:11] (10 lines, 94 tokens)
   benches/bench_pncg_branching_backends.py [279:9 - 289:13]

Clone found (python):
 - benches/bench_pncg_branching_backends.py [459:40 - 481:6] (22 lines, 172 tokens)
   benches/bench_pncg_branching_backends.py [413:34 - 435:18]

Clone found (python):
 - benches/bench_pncg_branching_backends.py [649:25 - 663:22] (14 lines, 159 tokens)
   benches/bench_pncg_branching_backends.py [475:23 - 489:25]

┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 205            │ 37528       │ 386317       │ 561          │ 15886 (42.33%)   │ 169514 (43.88%)   │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ csv    │ 9              │ 155         │ 11337        │ 0            │ 0 (0%)           │ 0 (0%)            │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 2              │ 45          │ 136          │ 0            │ 0 (0%)           │ 0 (0%)            │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ toml   │ 8              │ 933         │ 4016         │ 0            │ 0 (0%)           │ 0 (0%)            │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 224            │ 38661       │ 401806       │ 561          │ 15886 (41.09%)   │ 169514 (42.19%)   │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 561 clones.
HTML report saved to megalinter-reports/copy-paste/html/
ERROR: jscpd found too many duplicates (41.09%) over threshold (0%)
Error: ERROR: jscpd found too many duplicates (41.09%) over threshold (0%)
    at ThresholdReporter.report (/node-deps/node_modules/@jscpd/finder/dist/index.js:615:13)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:109:18
    at Array.forEach (<anonymous>)
    at /node-deps/node_modules/@jscpd/finder/dist/index.js:108:22
    at async /node-deps/node_modules/jscpd/dist/bin/jscpd.js:9:5

(Truncated to last 13333 characters out of 115134)
⚠️ PYTHON / ruff - 64 errors 
ld_mesh()
    |

PLR0915 Too many statements (57 > 50)
   --> exp/2026/04/18/2d-demo/src/10-simulation.py:320:5
    |
320 | def main():
    |     ^^^^
321 |     # --- Build mesh & initialize state ---
322 |     f2v, is_fascia, elem_mu, elem_lam = build_mesh()
    |

FBT003 Boolean positional value in function call
   --> exp/2026/04/18/2d-demo/src/10-simulation.py:431:37
    |
429 |         y_pos = 12
430 |         for fnt, text, color in hud_lines:
431 |             surf = fnt.render(text, True, color)
    |                                     ^^^^
432 |             screen.blit(surf, (15, y_pos))
433 |             y_pos += 28
    |

B007 Loop control variable `step` not used within loop body
   --> exp/2026/04/18/2d-demo/src/30-simulation-stable-neo-hookean-self-collision.py:829:9
    |
827 |     contact_points = np.empty((0, 2), dtype=pos.dtype)
828 |
829 |     for step in range(SUBSTEPS):
    |         ^^^^
830 |         substep_contacts, substep_points = substep(
831 |             pos,
    |
help: Rename unused `step` to `_step`

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/10-surface-prestrain-forward.py:248:49
    |
246 |         output = self.base.grad(state)
247 |         with torch.enable_grad():
248 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
249 |             energy = self.surface.energy(u)
250 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/10-surface-prestrain-forward.py:259:49
    |
257 |         output = self.base.hess_prod(state, p)
258 |         with torch.enable_grad():
259 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
260 |             p_local = p.detach()
261 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/10-surface-prestrain-forward.py:273:49
    |
271 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
272 |         with torch.enable_grad():
273 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
274 |             p_local = p.detach()
275 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/10-surface-prestrain-forward.py:890:9
    |
888 |       ]
889 |       for row in rows:
890 | /         lines.append(
891 | |             "| "
892 | |             + " | ".join(
893 | |                 [
894 | |                     str(row["case"]),
895 | |                     format_float(row["target/n_points"]),
896 | |                     format_float(row["surface/n_prestrain_triangles"]),
897 | |                     format_float(row["previous/target/error_rms"]),
898 | |                     format_float(row["prestrain/target/error_rms"]),
899 | |                     format_float(row["delta/target_error_rms"]),
900 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
901 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
902 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
903 | |                     format_float(row["forward/steps"]),
904 | |                     format_float(row["forward/success"]),
905 | |                 ]
906 | |             )
907 | |             + " |"
908 | |         )
    | |_________^
909 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:252:49
    |
250 |         output = self.base.grad(state)
251 |         with torch.enable_grad():
252 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
253 |             energy = self.surface.energy(u)
254 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:263:49
    |
261 |         output = self.base.hess_prod(state, p)
262 |         with torch.enable_grad():
263 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
264 |             p_local = p.detach()
265 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:277:49
    |
275 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
276 |         with torch.enable_grad():
277 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
278 |             p_local = p.detach()
279 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/20-surface-prestrain-expression000.py:894:9
    |
892 |       ]
893 |       for row in rows:
894 | /         lines.append(
895 | |             "| "
896 | |             + " | ".join(
897 | |                 [
898 | |                     str(row["case"]),
899 | |                     format_float(row["target/n_points"]),
900 | |                     format_float(row["surface/n_prestrain_triangles"]),
901 | |                     format_float(row["previous/target/error_rms"]),
902 | |                     format_float(row["prestrain/target/error_rms"]),
903 | |                     format_float(row["delta/target_error_rms"]),
904 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
905 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
906 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
907 | |                     format_float(row["forward/steps"]),
908 | |                     format_float(row["forward/success"]),
909 | |                 ]
910 | |             )
911 | |             + " |"
912 | |         )
    | |_________^
913 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:256:49
    |
254 |         output = self.base.grad(state)
255 |         with torch.enable_grad():
256 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
257 |             energy = self.surface.energy(u)
258 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:267:49
    |
265 |         output = self.base.hess_prod(state, p)
266 |         with torch.enable_grad():
267 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
268 |             p_local = p.detach()
269 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:281:49
    |
279 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
280 |         with torch.enable_grad():
281 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
282 |             p_local = p.detach()
283 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/21-surface-prestrain-expression000-prestrain04.py:902:9
    |
900 |       ]
901 |       for row in rows:
902 | /         lines.append(
903 | |             "| "
904 | |             + " | ".join(
905 | |                 [
906 | |                     str(row["case"]),
907 | |                     format_float(row["target/n_points"]),
908 | |                     format_float(row["surface/n_prestrain_triangles"]),
909 | |                     format_float(row["previous/target/error_rms"]),
910 | |                     format_float(row["prestrain/target/error_rms"]),
911 | |                     format_float(row["delta/target_error_rms"]),
912 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
913 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
914 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
915 | |                     format_float(row["forward/steps"]),
916 | |                     format_float(row["forward/success"]),
917 | |                 ]
918 | |             )
919 | |             + " |"
920 | |         )
    | |_________^
921 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:284:49
    |
282 |         output = self.base.grad(state)
283 |         with torch.enable_grad():
284 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
285 |             energy = self.surface.energy(u)
286 |             (grad,) = torch.autograd.grad(energy, u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:295:49
    |
293 |         output = self.base.hess_prod(state, p)
294 |         with torch.enable_grad():
295 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
296 |             p_local = p.detach()
297 |             energy = self.surface.energy(u)
    |

FBT003 Boolean positional value in function call
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:309:49
    |
307 |     def hess_prod_surface(self, state: Any, p: Full) -> Full:
308 |         with torch.enable_grad():
309 |             u = state.u.detach().requires_grad_(True)
    |                                                 ^^^^
310 |             p_local = p.detach()
311 |             energy = self.surface.energy(u)
    |

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/22-surface-metric-penalty-expression000-prestrain10.py:927:9
    |
925 |       ]
926 |       for row in rows:
927 | /         lines.append(
928 | |             "| "
929 | |             + " | ".join(
930 | |                 [
931 | |                     str(row["case"]),
932 | |                     format_float(row["target/n_points"]),
933 | |                     format_float(row["surface/n_prestrain_triangles"]),
934 | |                     format_float(row["previous/target/error_rms"]),
935 | |                     format_float(row["prestrain/target/error_rms"]),
936 | |                     format_float(row["delta/target_error_rms"]),
937 | |                     format_float(row["previous/surface/displacement_laplacian_rms"]),
938 | |                     format_float(row["prestrain/surface/displacement_laplacian_rms"]),
939 | |                     format_float(row["delta/surface_displacement_laplacian_rms"]),
940 | |                     format_float(row["forward/steps"]),
941 | |                     format_float(row["forward/success"]),
942 | |                 ]
943 | |             )
944 | |             + " |"
945 | |         )
    | |_________^
946 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

PERF401 Use `list.extend` to create a transformed list
   --> exp/2026/06/10/surface-prestrain/src/30-volume-area-change-diagnostics.py:346:9
    |
344 |       ]
345 |       for row in rows:
346 | /         lines.append(
347 | |             "| "
348 | |             + " | ".join(
349 | |                 [
350 | |                     str(row["case"]),
351 | |                     str(row["label"]),
352 | |                     format_float(row["mesh/n_tets"]),
353 | |                     format_float(row["surface/n_isface_triangles"]),
354 | |                     format_float(row["volume/rms"]),
355 | |                     format_float(row["volume/total_rel_change"]),
356 | |                     format_float(row["area/rms"]),
357 | |                     format_float(row["area/total_rel_change"]),
358 | |                     format_float(row["volume/n_inverted"]),
359 | |                 ]
360 | |             )
361 | |             + " |"
362 | |         )
    | |_________^
363 |       path.write_text("\n".join(lines) + "\n", encoding="utf-8")
    |
help: Replace for loop with list.extend

Found 64 errors.
No fixes available (13 hidden fixes can be enabled with the `--unsafe-fixes` option).

(Truncated to last 13333 characters out of 31100)

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@renovate renovate Bot force-pushed the renovate/lock-file-maintenance branch 2 times, most recently from 325da41 to ea5bfa5 Compare May 31, 2026 12:08
@renovate renovate Bot force-pushed the renovate/lock-file-maintenance branch 3 times, most recently from e5c2463 to 7aba303 Compare June 11, 2026 11:12
@renovate renovate Bot force-pushed the renovate/lock-file-maintenance branch from 2465dfb to a577cf6 Compare June 16, 2026 18:51
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