Assignment4#34

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laert-ll wants to merge 108 commits into

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Commits on Jun 12, 2024

Commits on Jun 13, 2024

complete task 1

kimj2
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kimj2
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activate ci on all assignment branches

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preliminary xml setup
laert-ll
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xml input for cuboids
laert-ll
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Commits on Jun 14, 2024

restore old changes with FileReader, ParticleGenerator, and parameters

kimj2
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fix tests

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restore old changes in fileReader and parameters

kimj2
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restore old changes in fileReader, parameters, ParticleGenerator, ParticleGeneratorTest, FileReaderTest

kimj2
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adjust to old changes in FileReader

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use Thermostat in "performSimulation()" with hardcoded args for now

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Commits on Jun 15, 2024

edit xsd

kimj2
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update xsd by adding ThermostatParameters

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Refactoring attempt not using BoundaryController
Ujin0912
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Compilation fix
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Merge branch 'refs/heads/Assignment4_Ujin' into Assignment4
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Gravity and some changes in main method with map
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add and fix test

kimj2
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use unique pointers instead of copying objects by value, general fixes

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use shared_ptr for calculator, general fixes

kimj2
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extend xsd with BoundaryParameters, adjust test

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adjust XMLReaderTest

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Refactoring attempt not using BoundaryController
Ujin0912
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Merge remote-tracking branch 'origin/Assignment4' into Assignment4_Ujin
Ujin0912
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Commits on Jun 16, 2024

xml new input format
laert-ll
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Commits on Jun 17, 2024

Commits on Jun 18, 2024

CI Pipeline fix attempt
Ujin0912
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CI Pipeline fix attempt - with -y and set LD_LIBRARY_PATH
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CI Pipeline fix attempt - remove LD_LIBRARY_PATH
Ujin0912
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CI Pipeline Fix attempt reverted + updateSimulationParameters fixed
Ujin0912
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txt file fixed
Ujin0912
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attempt to fix ci

kimj2
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attempt to fix ci by installing libxerces again

kimj2
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fix initializeNeighbors()

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add logging for easier debugging

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use cellSize as divisor for correct cellIndex-calculation

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rename loadCuboids and add logging

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Commits on Jun 19, 2024

fixed initialize neighbros
laert-ll
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fixed initialize neighbors and populate cells
laert-ll
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make initializeCells() and constructors better

kimj2
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use size_t for indexes

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Raw to shared pointer
Ujin0912
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small fix
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Saving State before Reversing
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Revert "Saving State before Reversing"
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Revert "small fix"
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Revert "Raw to shared pointer"
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use smart pointers instead of raw pointers

kimj2
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use "const" in parameters

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fix "nan"-values

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use logleve "DEBUG" for detailed loggings

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complete updateCells()

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link linkedCellContainer

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fix strings

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Merge branch 'refs/heads/Assignment4' into Assignment4_Laert

kimj2
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extend xsd, thermostat, TXTReader, XMLReader, ParticleGenerator, SimulationDataContainer, BoundaryParameters, add LinkedCellsParameters. Still need to adjust performSimulation()

kimj2
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update xsd, update performSimulation()

kimj2
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Merge pull request #32 from laert-ll/Assignment4_Laert
rlawnsiiiii
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Commits on Jun 20, 2024

fix XMLReaderTest, add XMLReaderLCTest

kimj2
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integrate gravity into xml, update tests and performSimulation()

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update txt input files

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add input-cuboid, generateDiscs for linked-cell container, update XMLTest, update xsd

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temporary ci-fix by doing cmaking again for test-job

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install libxerces-c-dev again

kimj2
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Fix in input-sun.txt and gravity
Ujin0912
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improve linked-cell

kimj2
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Merge branch 'refs/heads/Assignment4' into Assignment4_ci_fix

kimj2
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Merge pull request #33 from laert-ll/Assignment4_ci_fix
rlawnsiiiii
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attempt to fix ci

kimj2
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adjusted ThermostatTest for LinkedCellContainer
laert-ll
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attempt to fix tests in ci by adjusting paths to xml-files

kimj2
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added removeParticle function
laert-ll
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added tests for LinkedCellContainer
laert-ll
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Connect linked-cell algorithm with boundaryHandler

kimj2
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fix build

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do not sanitize, just run tests

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fix linkedCellContainerTest

kimj2
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added LC_LJCalculatorTest and adjusted LinkedCellContainerTest
laert-ll
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adjustments to LC_LJCalculatorTest
laert-ll
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Tests Fix
Ujin0912
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fix "getBoundaryCells()" and add test

kimj2
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removed calculateX test
laert-ll
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changed input logic to accept xml file alone
laert-ll
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add debugging logs, calculateF_LC_pairwise()

kimj2
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added id to particle creation for comparison
laert-ll
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spdlog fix
laert-ll
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tiny fix
laert-ll
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add debugging loggings

kimj2
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add sigma and epsilon

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add calculateGravityLC in LC_LJCalculator

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fix input-disc.xml

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upload a template input-cuboid.xml

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make gravtiy_arg protected

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apply gravity to oldF too

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revert applying gravity to oldF too

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set velocities and forces of ghost particle to zeros

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use downcasting to call calculateFPairwise

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do double operation

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