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FileNotFoundError: [Errno 2] No such file or directory: 'output/bowtie2/metadata.yaml'

Status: Open.

#47 In knights-lab/SHOGUN;

· bark9299 opened on Jan 9, 2026

Shogun function by using kraken & Bracken output

Status: Open.

#45 In knights-lab/SHOGUN;

· lzhangxcode opened on Feb 14, 2024

shogun filter - incompatible DB error

Status: Open.

#44 In knights-lab/SHOGUN;

· mkariush opened on Feb 23, 2023

Issues with -a option, shogun pipeline command

Status: Open.

#43 In knights-lab/SHOGUN;

· rahel31 opened on Nov 10, 2022

SHOGUN fails silently when bowtie2 runs out of memory

Status: Open.

#42 In knights-lab/SHOGUN;

· ElDeveloper opened on May 4, 2022

Additional documents request

Status: Open.

#40 In knights-lab/SHOGUN;

· Justice-Lu opened on Mar 15, 2021

Additional functional databases

Status: Open.

#39 In knights-lab/SHOGUN;

· prmac opened on Oct 21, 2020

CUDA incompatibility error

Status: Open.

#38 In knights-lab/SHOGUN;

· idoerg opened on Aug 18, 2020

Running SHOGUN according to documentation fails with large datasets

Status: Open.

#27 In knights-lab/SHOGUN;

· SJohnsonMayo opened on Nov 19, 2019

Mac installation

Status: Open.

#26 In knights-lab/SHOGUN;

· I-Shatha opened on Sep 30, 2019

shogun functional fails to run with no output error

Status: Open.

#25 In knights-lab/SHOGUN;

· aemmons90 opened on Sep 17, 2019

Add a mention of the algorithm used for redistribution

Status: Open.

#24 In knights-lab/SHOGUN;

· wasade opened on Jun 10, 2019