Purpose

FCAN is a repository where you can find R functions for manipulating Fc Array datasets in a common format.

General Usage and Advice

Functions assume the structure of your data matches this. Having longitudinal information ("times" column) is optional - if your data is single-time-point, no "times" column necessary.

Recommended Layout

This is the suggested directory structure. Modify flags$adj_cwd if experiments/ does not live below fc_load_config.R

• parent/
  • results/ contains the output of all your experiments
  • studies/ contains all data (presumably in further sub-directories) for the studies you are working on
  • working/ contains fc_config files
    • experiments/ contains .R files that are your day-to-day "experiments"
      • funcs/ if you want to repeat an experiment (likely), build a function for it and stuff it here

For more information, see the wiki!

To-do

• More documentation
  • Continue oxygenizing functions
  • example.R file with beginner/intermediate/advanced function usage examples
• Get rid of any bugs that appear (just use XGH)

If something doesn't work like it should or you have something you wish was included here, send me an email kyle [dot] morrison [dot] gr [at] dartmouth [dot] edu