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nife_intern Wiki

Computational oral biofilm pipeline — NIFE internship (May–July 2026), SIIRI/TRR-298 consortium.

Pages

• Pipeline Overview — NGS → MetaPhlAn → GEM → dFBA → COMETS
• Research Team — NIFE collaborators and research areas
• Species and Cross-feeding — 7-species model, metabolic interactions
• Sobol Sensitivity — Key parameter sensitivity results
• MetaPhlAn Setup — Database, PBS job, known API changes
• Dieckow 2025 In-vivo Analysis — 10-guild gLV + Hamilton TMCMC on PRJEB71108 cohort